Experiment: Carbenicillin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5425 and Pf1N1B4_5426 are separated by 461 nucleotides Pf1N1B4_5426 and Pf1N1B4_5427 are separated by 130 nucleotides Pf1N1B4_5427 and Pf1N1B4_5428 are separated by 474 nucleotides
Pf1N1B4_5425 - DNA-binding protein HU-beta, at 165,496 to 165,771
_5425
Pf1N1B4_5426 - hypothetical protein, at 166,233 to 166,580
_5426
Pf1N1B4_5427 - C4-type zinc finger protein, DksA/TraR family, at 166,711 to 167,184
_5427
Pf1N1B4_5428 - hypothetical protein, at 167,659 to 168,645
_5428
Position (kb) 166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 165.724 kb on + strand, within Pf1N1B4_5425 at 165.725 kb on - strand, within Pf1N1B4_5425 at 165.828 kb on - strand at 165.848 kb on + strand at 165.849 kb on - strand at 165.903 kb on - strand at 165.949 kb on + strand at 165.950 kb on - strand at 165.950 kb on - strand at 166.031 kb on - strand at 166.031 kb on - strand at 166.031 kb on - strand at 166.128 kb on - strand at 166.211 kb on - strand at 166.222 kb on + strand at 166.222 kb on + strand at 166.223 kb on - strand at 166.274 kb on + strand, within Pf1N1B4_5426 at 166.274 kb on + strand, within Pf1N1B4_5426 at 166.274 kb on + strand, within Pf1N1B4_5426 at 166.275 kb on - strand, within Pf1N1B4_5426 at 166.275 kb on - strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.288 kb on - strand, within Pf1N1B4_5426 at 166.288 kb on - strand, within Pf1N1B4_5426 at 166.288 kb on - strand, within Pf1N1B4_5426 at 166.347 kb on - strand, within Pf1N1B4_5426 at 166.371 kb on + strand, within Pf1N1B4_5426 at 166.372 kb on - strand, within Pf1N1B4_5426 at 166.439 kb on - strand, within Pf1N1B4_5426 at 166.532 kb on - strand, within Pf1N1B4_5426 at 166.603 kb on + strand at 166.603 kb on + strand at 166.603 kb on + strand at 166.603 kb on + strand at 166.603 kb on + strand at 166.604 kb on - strand at 166.604 kb on - strand at 166.604 kb on - strand at 166.819 kb on + strand, within Pf1N1B4_5427 at 166.819 kb on + strand, within Pf1N1B4_5427 at 166.820 kb on - strand, within Pf1N1B4_5427 at 166.820 kb on - strand, within Pf1N1B4_5427 at 166.893 kb on - strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.977 kb on - strand at 166.986 kb on + strand, within Pf1N1B4_5427 at 166.986 kb on + strand, within Pf1N1B4_5427 at 166.987 kb on - strand, within Pf1N1B4_5427 at 166.987 kb on - strand, within Pf1N1B4_5427 at 167.056 kb on + strand, within Pf1N1B4_5427 at 167.125 kb on + strand, within Pf1N1B4_5427 at 167.125 kb on + strand, within Pf1N1B4_5427 at 167.125 kb on + strand, within Pf1N1B4_5427 at 167.125 kb on + strand, within Pf1N1B4_5427 at 167.125 kb on + strand, within Pf1N1B4_5427 at 167.125 kb on + strand, within Pf1N1B4_5427 at 167.125 kb on + strand, within Pf1N1B4_5427 at 167.126 kb on - strand, within Pf1N1B4_5427 at 167.128 kb on - strand, within Pf1N1B4_5427 at 167.182 kb on + strand at 167.182 kb on + strand at 167.183 kb on - strand at 167.239 kb on - strand at 167.275 kb on - strand at 167.355 kb on - strand at 167.381 kb on - strand at 167.381 kb on - strand at 167.384 kb on - strand at 167.384 kb on - strand at 167.384 kb on - strand at 167.384 kb on - strand at 167.384 kb on - strand at 167.384 kb on - strand at 167.438 kb on - strand at 167.476 kb on - strand at 167.566 kb on - strand at 167.566 kb on - strand at 167.594 kb on + strand at 167.594 kb on + strand at 167.595 kb on - strand at 167.595 kb on - strand at 167.629 kb on + strand at 167.629 kb on + strand at 167.640 kb on - strand at 167.640 kb on - strand at 167.672 kb on - strand at 167.745 kb on + strand at 167.766 kb on + strand, within Pf1N1B4_5428 at 167.788 kb on + strand, within Pf1N1B4_5428 at 167.788 kb on + strand, within Pf1N1B4_5428 at 167.843 kb on - strand, within Pf1N1B4_5428 at 168.034 kb on + strand, within Pf1N1B4_5428 at 168.035 kb on - strand, within Pf1N1B4_5428 at 168.052 kb on + strand, within Pf1N1B4_5428 at 168.053 kb on - strand, within Pf1N1B4_5428 at 168.053 kb on - strand at 168.069 kb on + strand, within Pf1N1B4_5428 at 168.070 kb on - strand, within Pf1N1B4_5428 at 168.130 kb on + strand, within Pf1N1B4_5428 at 168.131 kb on - strand, within Pf1N1B4_5428 at 168.131 kb on - strand, within Pf1N1B4_5428 at 168.131 kb on - strand, within Pf1N1B4_5428 at 168.131 kb on - strand, within Pf1N1B4_5428 at 168.133 kb on + strand, within Pf1N1B4_5428 at 168.133 kb on + strand, within Pf1N1B4_5428 at 168.133 kb on + strand, within Pf1N1B4_5428 at 168.133 kb on + strand, within Pf1N1B4_5428 at 168.133 kb on + strand, within Pf1N1B4_5428 at 168.133 kb on + strand, within Pf1N1B4_5428 at 168.134 kb on - strand, within Pf1N1B4_5428 at 168.134 kb on - strand, within Pf1N1B4_5428 at 168.145 kb on + strand, within Pf1N1B4_5428
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml remove 165,724 + Pf1N1B4_5425 0.83 +2.2 165,725 - Pf1N1B4_5425 0.83 +0.5 165,828 - +0.0 165,848 + -1.6 165,849 - -0.2 165,903 - +2.2 165,949 + -0.8 165,950 - -0.6 165,950 - +0.2 166,031 - +1.0 166,031 - +1.2 166,031 - -0.6 166,128 - -0.1 166,211 - +0.8 166,222 + -0.0 166,222 + +0.2 166,223 - +0.1 166,274 + Pf1N1B4_5426 0.12 -0.1 166,274 + Pf1N1B4_5426 0.12 +1.4 166,274 + Pf1N1B4_5426 0.12 +1.0 166,275 - Pf1N1B4_5426 0.12 +0.6 166,275 - Pf1N1B4_5426 0.12 +0.2 166,287 + Pf1N1B4_5426 0.16 +0.4 166,287 + Pf1N1B4_5426 0.16 -3.2 166,287 + Pf1N1B4_5426 0.16 +0.0 166,287 + Pf1N1B4_5426 0.16 +0.9 166,287 + Pf1N1B4_5426 0.16 +0.0 166,288 - Pf1N1B4_5426 0.16 +1.6 166,288 - Pf1N1B4_5426 0.16 +0.8 166,288 - Pf1N1B4_5426 0.16 +1.2 166,347 - Pf1N1B4_5426 0.33 -0.2 166,371 + Pf1N1B4_5426 0.40 +1.0 166,372 - Pf1N1B4_5426 0.40 +0.8 166,439 - Pf1N1B4_5426 0.59 -2.5 166,532 - Pf1N1B4_5426 0.86 +0.2 166,603 + -0.4 166,603 + +0.4 166,603 + -0.6 166,603 + +0.2 166,603 + -0.3 166,604 - -2.1 166,604 - +0.4 166,604 - +1.2 166,819 + Pf1N1B4_5427 0.23 -0.2 166,819 + Pf1N1B4_5427 0.23 -0.4 166,820 - Pf1N1B4_5427 0.23 +0.2 166,820 - Pf1N1B4_5427 0.23 +0.6 166,893 - Pf1N1B4_5427 0.38 -0.1 166,976 + Pf1N1B4_5427 0.56 -0.9 166,976 + Pf1N1B4_5427 0.56 +0.2 166,976 + Pf1N1B4_5427 0.56 +0.5 166,976 + Pf1N1B4_5427 0.56 +0.2 166,976 + Pf1N1B4_5427 0.56 -0.2 166,976 + Pf1N1B4_5427 0.56 -0.4 166,976 + Pf1N1B4_5427 0.56 -1.8 166,976 + Pf1N1B4_5427 0.56 +1.2 166,976 + Pf1N1B4_5427 0.56 -0.7 166,977 - +0.2 166,986 + Pf1N1B4_5427 0.58 -0.1 166,986 + Pf1N1B4_5427 0.58 -1.8 166,987 - Pf1N1B4_5427 0.58 +2.2 166,987 - Pf1N1B4_5427 0.58 -0.2 167,056 + Pf1N1B4_5427 0.73 -1.1 167,125 + Pf1N1B4_5427 0.87 -1.2 167,125 + Pf1N1B4_5427 0.87 +0.8 167,125 + Pf1N1B4_5427 0.87 -2.3 167,125 + Pf1N1B4_5427 0.87 +1.6 167,125 + Pf1N1B4_5427 0.87 +0.9 167,125 + Pf1N1B4_5427 0.87 +0.2 167,125 + Pf1N1B4_5427 0.87 +1.6 167,126 - Pf1N1B4_5427 0.88 +0.0 167,128 - Pf1N1B4_5427 0.88 -0.8 167,182 + +1.0 167,182 + -0.8 167,183 - -0.3 167,239 - -0.1 167,275 - +0.1 167,355 - -1.4 167,381 - -0.7 167,381 - +0.9 167,384 - +0.6 167,384 - +1.2 167,384 - +0.3 167,384 - +2.1 167,384 - +0.7 167,384 - -0.4 167,438 - +2.2 167,476 - -0.5 167,566 - +0.7 167,566 - +0.6 167,594 + -0.4 167,594 + +2.8 167,595 - -0.9 167,595 - -0.8 167,629 + +0.2 167,629 + +1.0 167,640 - +0.0 167,640 - +0.6 167,672 - -0.2 167,745 + -1.4 167,766 + Pf1N1B4_5428 0.11 -0.9 167,788 + Pf1N1B4_5428 0.13 +0.2 167,788 + Pf1N1B4_5428 0.13 +1.2 167,843 - Pf1N1B4_5428 0.19 +0.2 168,034 + Pf1N1B4_5428 0.38 -0.4 168,035 - Pf1N1B4_5428 0.38 +0.6 168,052 + Pf1N1B4_5428 0.40 +0.1 168,053 - Pf1N1B4_5428 0.40 +0.2 168,053 - +0.6 168,069 + Pf1N1B4_5428 0.42 +0.9 168,070 - Pf1N1B4_5428 0.42 -1.1 168,130 + Pf1N1B4_5428 0.48 +0.1 168,131 - Pf1N1B4_5428 0.48 -0.6 168,131 - Pf1N1B4_5428 0.48 +0.2 168,131 - Pf1N1B4_5428 0.48 +0.1 168,131 - Pf1N1B4_5428 0.48 +0.9 168,133 + Pf1N1B4_5428 0.48 -0.8 168,133 + Pf1N1B4_5428 0.48 -0.8 168,133 + Pf1N1B4_5428 0.48 -1.4 168,133 + Pf1N1B4_5428 0.48 +1.2 168,133 + Pf1N1B4_5428 0.48 -1.4 168,133 + Pf1N1B4_5428 0.48 -1.5 168,134 - Pf1N1B4_5428 0.48 +2.2 168,134 - Pf1N1B4_5428 0.48 -1.4 168,145 + Pf1N1B4_5428 0.49 -0.8
Or see this region's nucleotide sequence