Experiment: Carbenicillin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4751 and Pf1N1B4_4752 are separated by 222 nucleotides Pf1N1B4_4752 and Pf1N1B4_4753 are separated by 51 nucleotides
Pf1N1B4_4751 - Ku domain protein, at 5,248,957 to 5,249,817
_4751
Pf1N1B4_4752 - FIG00962948: hypothetical protein, at 5,250,040 to 5,250,384
_4752
Pf1N1B4_4753 - Soluble aldose sugar dehydrogenase, PQQ-dependent (EC 1.1.5.-), at 5,250,436 to 5,251,587
_4753
Position (kb) 5250
5251 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5249.071 kb on - strand, within Pf1N1B4_4751 at 5249.086 kb on - strand at 5249.450 kb on + strand at 5249.451 kb on - strand, within Pf1N1B4_4751 at 5249.451 kb on - strand at 5249.483 kb on + strand, within Pf1N1B4_4751 at 5249.484 kb on - strand, within Pf1N1B4_4751 at 5249.484 kb on - strand, within Pf1N1B4_4751 at 5249.487 kb on - strand, within Pf1N1B4_4751 at 5249.487 kb on - strand, within Pf1N1B4_4751 at 5249.603 kb on + strand, within Pf1N1B4_4751 at 5249.604 kb on - strand at 5249.619 kb on - strand, within Pf1N1B4_4751 at 5249.841 kb on - strand at 5249.841 kb on - strand at 5249.841 kb on - strand at 5249.927 kb on - strand at 5249.948 kb on - strand at 5249.951 kb on + strand at 5250.015 kb on - strand at 5250.376 kb on + strand at 5250.377 kb on - strand at 5250.413 kb on - strand at 5250.444 kb on + strand at 5250.526 kb on - strand at 5250.772 kb on + strand, within Pf1N1B4_4753 at 5250.772 kb on + strand, within Pf1N1B4_4753 at 5250.772 kb on + strand, within Pf1N1B4_4753 at 5250.772 kb on + strand, within Pf1N1B4_4753 at 5250.772 kb on + strand, within Pf1N1B4_4753 at 5250.772 kb on + strand, within Pf1N1B4_4753 at 5250.773 kb on - strand, within Pf1N1B4_4753 at 5250.773 kb on - strand, within Pf1N1B4_4753 at 5250.773 kb on - strand at 5250.773 kb on - strand, within Pf1N1B4_4753 at 5250.949 kb on + strand, within Pf1N1B4_4753 at 5251.255 kb on + strand, within Pf1N1B4_4753 at 5251.255 kb on + strand, within Pf1N1B4_4753 at 5251.255 kb on + strand, within Pf1N1B4_4753 at 5251.255 kb on + strand, within Pf1N1B4_4753 at 5251.255 kb on + strand, within Pf1N1B4_4753 at 5251.255 kb on + strand, within Pf1N1B4_4753
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml remove 5,249,071 - Pf1N1B4_4751 0.13 -0.0 5,249,086 - +0.9 5,249,450 + +2.2 5,249,451 - Pf1N1B4_4751 0.57 -0.1 5,249,451 - -1.0 5,249,483 + Pf1N1B4_4751 0.61 -0.2 5,249,484 - Pf1N1B4_4751 0.61 -2.0 5,249,484 - Pf1N1B4_4751 0.61 -0.8 5,249,487 - Pf1N1B4_4751 0.62 +0.1 5,249,487 - Pf1N1B4_4751 0.62 -1.2 5,249,603 + Pf1N1B4_4751 0.75 +0.6 5,249,604 - -1.2 5,249,619 - Pf1N1B4_4751 0.77 +1.4 5,249,841 - +0.6 5,249,841 - +1.3 5,249,841 - -0.0 5,249,927 - +0.5 5,249,948 - -0.4 5,249,951 + +0.6 5,250,015 - -0.4 5,250,376 + -0.4 5,250,377 - -0.2 5,250,413 - +0.4 5,250,444 + -1.0 5,250,526 - -1.4 5,250,772 + Pf1N1B4_4753 0.29 +0.1 5,250,772 + Pf1N1B4_4753 0.29 -0.4 5,250,772 + Pf1N1B4_4753 0.29 +0.9 5,250,772 + Pf1N1B4_4753 0.29 +2.0 5,250,772 + Pf1N1B4_4753 0.29 +0.4 5,250,772 + Pf1N1B4_4753 0.29 +0.2 5,250,773 - Pf1N1B4_4753 0.29 +0.9 5,250,773 - Pf1N1B4_4753 0.29 +0.8 5,250,773 - +1.3 5,250,773 - Pf1N1B4_4753 0.29 +1.6 5,250,949 + Pf1N1B4_4753 0.45 +0.7 5,251,255 + Pf1N1B4_4753 0.71 +0.2 5,251,255 + Pf1N1B4_4753 0.71 +2.6 5,251,255 + Pf1N1B4_4753 0.71 -0.8 5,251,255 + Pf1N1B4_4753 0.71 +0.3 5,251,255 + Pf1N1B4_4753 0.71 +0.7 5,251,255 + Pf1N1B4_4753 0.71 -1.4
Or see this region's nucleotide sequence