Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4457

Experiment: Carbenicillin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4455 and Pf1N1B4_4456 overlap by 4 nucleotidesPf1N1B4_4456 and Pf1N1B4_4457 overlap by 14 nucleotidesPf1N1B4_4457 and Pf1N1B4_4458 overlap by 4 nucleotides Pf1N1B4_4455 - FIG00953528: hypothetical protein, at 4,915,941 to 4,916,585 _4455 Pf1N1B4_4456 - Short-chain dehydrogenase/reductase SDR, at 4,916,582 to 4,917,391 _4456 Pf1N1B4_4457 - long-chain acyl-CoA synthetase, at 4,917,378 to 4,918,052 _4457 Pf1N1B4_4458 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 4,918,049 to 4,919,530 _4458 Position (kb) 4917 4918 4919Strain fitness (log2 ratio) -2 -1 0 1at 4916.719 kb on - strand, within Pf1N1B4_4456at 4916.862 kb on + strand, within Pf1N1B4_4456at 4916.976 kb on + strandat 4916.976 kb on + strand, within Pf1N1B4_4456at 4917.185 kb on + strandat 4917.436 kb on + strandat 4917.437 kb on - strandat 4917.446 kb on - strand, within Pf1N1B4_4457at 4917.562 kb on + strand, within Pf1N1B4_4457at 4917.563 kb on - strand, within Pf1N1B4_4457at 4917.812 kb on - strand, within Pf1N1B4_4457at 4917.826 kb on + strand, within Pf1N1B4_4457at 4917.826 kb on + strand, within Pf1N1B4_4457at 4917.827 kb on - strand, within Pf1N1B4_4457at 4917.919 kb on + strand, within Pf1N1B4_4457at 4917.920 kb on - strand, within Pf1N1B4_4457at 4917.920 kb on - strand, within Pf1N1B4_4457at 4918.429 kb on - strand, within Pf1N1B4_4458at 4918.662 kb on + strand, within Pf1N1B4_4458at 4918.662 kb on + strandat 4918.663 kb on - strand, within Pf1N1B4_4458

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml
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4,916,719 - Pf1N1B4_4456 0.17 -2.7
4,916,862 + Pf1N1B4_4456 0.35 +0.7
4,916,976 + -1.7
4,916,976 + Pf1N1B4_4456 0.49 -0.3
4,917,185 + +0.1
4,917,436 + +0.7
4,917,437 - -0.6
4,917,446 - Pf1N1B4_4457 0.10 -0.3
4,917,562 + Pf1N1B4_4457 0.27 +1.2
4,917,563 - Pf1N1B4_4457 0.27 -0.3
4,917,812 - Pf1N1B4_4457 0.64 -1.7
4,917,826 + Pf1N1B4_4457 0.66 -0.5
4,917,826 + Pf1N1B4_4457 0.66 +1.7
4,917,827 - Pf1N1B4_4457 0.67 -1.5
4,917,919 + Pf1N1B4_4457 0.80 -1.3
4,917,920 - Pf1N1B4_4457 0.80 -0.8
4,917,920 - Pf1N1B4_4457 0.80 -0.7
4,918,429 - Pf1N1B4_4458 0.26 -0.1
4,918,662 + Pf1N1B4_4458 0.41 +0.6
4,918,662 + +1.4
4,918,663 - Pf1N1B4_4458 0.41 -2.2

Or see this region's nucleotide sequence