Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3844

Experiment: Carbenicillin 2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 2 mg/ml
4,260,726	+				+1.3
4,260,726	+				-0.6
4,260,809	+				+1.4
4,260,809	+				+0.9
4,260,811	+				+0.4
4,260,811	+				+0.1
4,260,811	+				+0.3
4,260,811	+				-1.1
4,260,811	+				-1.7
4,260,811	+				-1.1
4,260,811	+				+0.1
4,260,811	+				-1.7
4,260,811	+				+0.9
4,260,812	-				-0.7
4,260,884	+				+0.9
4,260,885	-				-0.1
4,260,885	-				-0.1
4,260,930	-				-0.0
4,260,985	-		Pf1N1B4_3843	0.25	+1.1
4,261,053	+		Pf1N1B4_3843	0.56	+0.3
4,261,053	+		Pf1N1B4_3843	0.56	-0.1
4,261,054	-		Pf1N1B4_3843	0.57	+0.6
4,261,054	-		Pf1N1B4_3843	0.57	-0.0
4,261,054	-		Pf1N1B4_3843	0.57	-0.8
4,261,092	-		Pf1N1B4_3843	0.75	-0.1
4,261,134	+				+0.1
4,261,134	+				+1.2
4,261,134	+				-0.6
4,261,338	+				-0.7
4,261,365	+				+0.2
4,261,374	-				-0.5
4,261,374	-				-1.7
4,261,475	+				+0.1
4,261,538	+				+1.9
4,261,538	+				-1.0
4,261,538	+				+0.9
4,261,538	+				-1.5
4,261,539	-				+1.0
4,261,539	-				+1.3
4,261,539	-				-1.6
4,261,539	-				-0.1
4,261,539	-				-1.1
4,261,539	-				-1.9
4,261,548	+				+0.4
4,261,654	+				-0.1
4,261,654	+				+0.9
4,261,654	+				+0.4
4,261,673	+				+2.3
4,262,156	+		Pf1N1B4_3844	0.21	-1.5
4,262,667	+		Pf1N1B4_3844	0.44	-0.9
4,262,667	+		Pf1N1B4_3844	0.44	-0.6
4,262,952	+		Pf1N1B4_3844	0.56	+0.2
4,262,952	+		Pf1N1B4_3844	0.56	+0.4
4,262,952	+		Pf1N1B4_3844	0.56	-2.5
4,262,953	-		Pf1N1B4_3844	0.56	-1.7
4,262,953	-		Pf1N1B4_3844	0.56	-0.4
4,262,953	-		Pf1N1B4_3844	0.56	-0.1
4,262,953	-		Pf1N1B4_3844	0.56	-1.5
4,263,068	+		Pf1N1B4_3844	0.61	-2.5
4,263,108	+		Pf1N1B4_3844	0.63	-0.5
4,263,129	+		Pf1N1B4_3844	0.64	-1.5
4,263,150	+		Pf1N1B4_3844	0.65	-1.1
4,263,151	-		Pf1N1B4_3844	0.65	-1.1
4,263,396	+		Pf1N1B4_3844	0.76	+3.9
4,263,396	+		Pf1N1B4_3844	0.76	-1.9
4,263,483	+		Pf1N1B4_3844	0.80	-0.7
4,263,490	-		Pf1N1B4_3844	0.80	+0.6
4,263,801	+				-1.1
4,263,801	+				+0.4
4,263,801	+				-1.1
4,264,028	+				-0.4
4,264,028	+				-1.9
4,264,033	-				-0.0
4,264,035	-				-0.7
4,264,085	+				-0.9
4,264,085	+				+0.2
4,264,085	+				+0.6
4,264,085	+				-0.9
4,264,086	-				-2.3
4,264,086	-				-0.6
4,264,086	-				-0.1
4,264,089	+				-0.1
4,264,089	+				+0.6
4,264,089	+				+0.9
4,264,089	+				-0.7
4,264,089	+				-0.7
4,264,090	-				-0.7
4,264,090	-				+0.9
4,264,090	-				-0.5
4,264,090	-				-0.1
4,264,090	-				+1.1
4,264,090	-				-1.7
4,264,411	+		Pf1N1B4_3845	0.13	+0.1
4,264,412	-		Pf1N1B4_3845	0.13	+1.5
4,264,412	-		Pf1N1B4_3845	0.13	-1.1
4,264,549	+		Pf1N1B4_3845	0.19	-0.1
4,264,550	-		Pf1N1B4_3845	0.19	-1.5
4,264,550	-		Pf1N1B4_3845	0.19	+0.9
4,264,550	-		Pf1N1B4_3845	0.19	-1.7
4,264,564	+		Pf1N1B4_3845	0.20	-0.7
4,264,731	-		Pf1N1B4_3845	0.27	-0.1
4,264,860	+		Pf1N1B4_3845	0.32	-0.1
4,264,895	+		Pf1N1B4_3845	0.34	+2.4
4,264,895	+		Pf1N1B4_3845	0.34	-1.6
4,264,895	+		Pf1N1B4_3845	0.34	-1.0
4,264,895	+		Pf1N1B4_3845	0.34	-2.5
4,264,896	-		Pf1N1B4_3845	0.34	-0.1
4,264,896	-		Pf1N1B4_3845	0.34	+1.1
4,264,900	+		Pf1N1B4_3845	0.34	-0.6
4,264,900	+		Pf1N1B4_3845	0.34	-1.5