Experiment: Carbenicillin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_336 and Pf1N1B4_337 overlap by 11 nucleotides Pf1N1B4_337 and Pf1N1B4_338 are separated by 117 nucleotides
Pf1N1B4_336 - Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40), at 399,494 to 400,861
_336
Pf1N1B4_337 - O-antigen export system permease protein RfbD, at 400,851 to 401,669
_337
Pf1N1B4_338 - Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-), at 401,787 to 402,794
_338
Position (kb) 400
401
402 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 399.852 kb on + strand, within Pf1N1B4_336 at 399.853 kb on - strand, within Pf1N1B4_336 at 399.853 kb on - strand, within Pf1N1B4_336 at 399.853 kb on - strand, within Pf1N1B4_336 at 399.856 kb on + strand, within Pf1N1B4_336 at 399.856 kb on + strand, within Pf1N1B4_336 at 399.856 kb on + strand at 399.856 kb on + strand, within Pf1N1B4_336 at 399.856 kb on + strand, within Pf1N1B4_336 at 399.856 kb on + strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.858 kb on + strand, within Pf1N1B4_336 at 399.859 kb on - strand, within Pf1N1B4_336 at 399.859 kb on - strand, within Pf1N1B4_336 at 399.864 kb on + strand, within Pf1N1B4_336 at 399.864 kb on + strand, within Pf1N1B4_336 at 399.865 kb on - strand, within Pf1N1B4_336 at 399.865 kb on - strand, within Pf1N1B4_336 at 399.865 kb on - strand, within Pf1N1B4_336 at 399.865 kb on - strand, within Pf1N1B4_336 at 399.865 kb on - strand, within Pf1N1B4_336 at 399.958 kb on + strand, within Pf1N1B4_336 at 399.959 kb on - strand, within Pf1N1B4_336 at 399.959 kb on - strand, within Pf1N1B4_336 at 399.976 kb on + strand, within Pf1N1B4_336 at 399.977 kb on - strand, within Pf1N1B4_336 at 399.977 kb on - strand, within Pf1N1B4_336 at 399.977 kb on - strand, within Pf1N1B4_336 at 400.023 kb on - strand, within Pf1N1B4_336 at 400.131 kb on + strand, within Pf1N1B4_336 at 400.131 kb on + strand, within Pf1N1B4_336 at 400.131 kb on + strand, within Pf1N1B4_336 at 400.131 kb on + strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.146 kb on + strand, within Pf1N1B4_336 at 400.262 kb on - strand, within Pf1N1B4_336 at 400.279 kb on + strand, within Pf1N1B4_336 at 400.316 kb on + strand, within Pf1N1B4_336 at 400.316 kb on + strand, within Pf1N1B4_336 at 400.317 kb on - strand, within Pf1N1B4_336 at 400.317 kb on - strand, within Pf1N1B4_336 at 400.355 kb on + strand, within Pf1N1B4_336 at 400.356 kb on - strand, within Pf1N1B4_336 at 400.356 kb on - strand, within Pf1N1B4_336 at 400.412 kb on - strand, within Pf1N1B4_336 at 400.412 kb on - strand, within Pf1N1B4_336 at 400.417 kb on - strand, within Pf1N1B4_336 at 400.417 kb on - strand, within Pf1N1B4_336 at 400.417 kb on - strand, within Pf1N1B4_336 at 400.417 kb on - strand, within Pf1N1B4_336 at 400.527 kb on + strand, within Pf1N1B4_336 at 400.528 kb on - strand, within Pf1N1B4_336 at 400.528 kb on - strand, within Pf1N1B4_336 at 400.752 kb on + strand at 400.752 kb on + strand at 400.752 kb on + strand at 400.752 kb on + strand at 400.806 kb on + strand at 400.807 kb on - strand at 400.807 kb on - strand at 400.810 kb on + strand at 400.810 kb on + strand at 400.811 kb on - strand at 400.849 kb on + strand at 400.850 kb on - strand at 400.850 kb on - strand at 400.850 kb on - strand at 400.850 kb on - strand at 400.850 kb on - strand at 400.852 kb on + strand at 400.874 kb on + strand at 400.928 kb on + strand at 400.929 kb on - strand at 400.930 kb on + strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.933 kb on + strand, within Pf1N1B4_337 at 400.933 kb on + strand, within Pf1N1B4_337 at 400.934 kb on - strand, within Pf1N1B4_337 at 400.934 kb on - strand at 400.934 kb on - strand, within Pf1N1B4_337 at 400.934 kb on - strand, within Pf1N1B4_337 at 400.960 kb on - strand, within Pf1N1B4_337 at 400.960 kb on - strand, within Pf1N1B4_337 at 401.216 kb on + strand, within Pf1N1B4_337 at 401.217 kb on - strand, within Pf1N1B4_337 at 401.217 kb on - strand, within Pf1N1B4_337 at 401.264 kb on + strand, within Pf1N1B4_337 at 401.316 kb on + strand, within Pf1N1B4_337 at 401.344 kb on - strand, within Pf1N1B4_337 at 401.386 kb on - strand, within Pf1N1B4_337 at 401.405 kb on + strand, within Pf1N1B4_337 at 401.406 kb on - strand, within Pf1N1B4_337 at 401.406 kb on - strand, within Pf1N1B4_337 at 401.432 kb on + strand, within Pf1N1B4_337 at 401.432 kb on + strand, within Pf1N1B4_337 at 401.655 kb on - strand at 401.675 kb on - strand at 401.735 kb on + strand at 402.084 kb on - strand, within Pf1N1B4_338 at 402.086 kb on - strand, within Pf1N1B4_338 at 402.086 kb on - strand, within Pf1N1B4_338 at 402.145 kb on + strand, within Pf1N1B4_338 at 402.198 kb on + strand, within Pf1N1B4_338 at 402.443 kb on - strand, within Pf1N1B4_338 at 402.474 kb on - strand at 402.554 kb on - strand, within Pf1N1B4_338
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml remove 399,852 + Pf1N1B4_336 0.26 -0.2 399,853 - Pf1N1B4_336 0.26 +0.5 399,853 - Pf1N1B4_336 0.26 -1.2 399,853 - Pf1N1B4_336 0.26 -0.2 399,856 + Pf1N1B4_336 0.26 +0.5 399,856 + Pf1N1B4_336 0.26 -2.0 399,856 + +0.8 399,856 + Pf1N1B4_336 0.26 -0.2 399,856 + Pf1N1B4_336 0.26 -0.1 399,856 + Pf1N1B4_336 0.26 -0.6 399,857 - Pf1N1B4_336 0.27 +0.2 399,857 - Pf1N1B4_336 0.27 -1.8 399,857 - Pf1N1B4_336 0.27 -2.9 399,857 - Pf1N1B4_336 0.27 -0.2 399,857 - Pf1N1B4_336 0.27 -2.1 399,857 - Pf1N1B4_336 0.27 -2.0 399,857 - Pf1N1B4_336 0.27 -2.9 399,857 - Pf1N1B4_336 0.27 +0.1 399,857 - Pf1N1B4_336 0.27 -2.0 399,857 - Pf1N1B4_336 0.27 -1.5 399,857 - Pf1N1B4_336 0.27 -1.3 399,857 - Pf1N1B4_336 0.27 -1.2 399,857 - Pf1N1B4_336 0.27 -0.5 399,857 - Pf1N1B4_336 0.27 -1.2 399,857 - Pf1N1B4_336 0.27 -2.6 399,857 - Pf1N1B4_336 0.27 -1.8 399,857 - Pf1N1B4_336 0.27 -1.2 399,857 - Pf1N1B4_336 0.27 -1.5 399,857 - Pf1N1B4_336 0.27 -1.5 399,857 - Pf1N1B4_336 0.27 +0.1 399,857 - Pf1N1B4_336 0.27 -0.8 399,857 - Pf1N1B4_336 0.27 -2.3 399,857 - Pf1N1B4_336 0.27 +0.1 399,857 - Pf1N1B4_336 0.27 -0.7 399,857 - Pf1N1B4_336 0.27 -1.6 399,857 - Pf1N1B4_336 0.27 -2.3 399,857 - Pf1N1B4_336 0.27 -1.2 399,857 - Pf1N1B4_336 0.27 -1.8 399,857 - Pf1N1B4_336 0.27 -1.8 399,857 - Pf1N1B4_336 0.27 -1.3 399,858 + Pf1N1B4_336 0.27 +0.3 399,859 - Pf1N1B4_336 0.27 +1.8 399,859 - Pf1N1B4_336 0.27 -1.8 399,864 + Pf1N1B4_336 0.27 +2.1 399,864 + Pf1N1B4_336 0.27 +0.8 399,865 - Pf1N1B4_336 0.27 -0.8 399,865 - Pf1N1B4_336 0.27 -2.1 399,865 - Pf1N1B4_336 0.27 -2.6 399,865 - Pf1N1B4_336 0.27 -2.2 399,865 - Pf1N1B4_336 0.27 -2.5 399,958 + Pf1N1B4_336 0.34 -1.3 399,959 - Pf1N1B4_336 0.34 -0.9 399,959 - Pf1N1B4_336 0.34 -1.2 399,976 + Pf1N1B4_336 0.35 +0.2 399,977 - Pf1N1B4_336 0.35 -0.8 399,977 - Pf1N1B4_336 0.35 -2.5 399,977 - Pf1N1B4_336 0.35 -1.3 400,023 - Pf1N1B4_336 0.39 -1.6 400,131 + Pf1N1B4_336 0.47 -2.0 400,131 + Pf1N1B4_336 0.47 -0.9 400,131 + Pf1N1B4_336 0.47 -1.2 400,131 + Pf1N1B4_336 0.47 -1.2 400,132 - Pf1N1B4_336 0.47 -0.2 400,132 - Pf1N1B4_336 0.47 -1.5 400,132 - Pf1N1B4_336 0.47 -0.8 400,132 - Pf1N1B4_336 0.47 -1.0 400,132 - Pf1N1B4_336 0.47 -3.8 400,132 - Pf1N1B4_336 0.47 -0.9 400,132 - Pf1N1B4_336 0.47 -0.2 400,132 - Pf1N1B4_336 0.47 +0.8 400,132 - Pf1N1B4_336 0.47 -1.2 400,132 - Pf1N1B4_336 0.47 -1.2 400,132 - Pf1N1B4_336 0.47 -0.8 400,132 - Pf1N1B4_336 0.47 -1.3 400,132 - Pf1N1B4_336 0.47 -1.4 400,132 - Pf1N1B4_336 0.47 +0.2 400,132 - Pf1N1B4_336 0.47 -1.2 400,132 - Pf1N1B4_336 0.47 -2.2 400,146 + Pf1N1B4_336 0.48 -0.6 400,262 - Pf1N1B4_336 0.56 -1.8 400,279 + Pf1N1B4_336 0.57 -1.8 400,316 + Pf1N1B4_336 0.60 -0.2 400,316 + Pf1N1B4_336 0.60 +0.2 400,317 - Pf1N1B4_336 0.60 -1.0 400,317 - Pf1N1B4_336 0.60 -0.2 400,355 + Pf1N1B4_336 0.63 -0.4 400,356 - Pf1N1B4_336 0.63 -2.2 400,356 - Pf1N1B4_336 0.63 -3.1 400,412 - Pf1N1B4_336 0.67 -0.8 400,412 - Pf1N1B4_336 0.67 -1.0 400,417 - Pf1N1B4_336 0.67 +1.4 400,417 - Pf1N1B4_336 0.67 -2.9 400,417 - Pf1N1B4_336 0.67 -0.8 400,417 - Pf1N1B4_336 0.67 -2.6 400,527 + Pf1N1B4_336 0.76 -1.8 400,528 - Pf1N1B4_336 0.76 -1.8 400,528 - Pf1N1B4_336 0.76 -1.5 400,752 + -0.7 400,752 + -2.0 400,752 + -0.9 400,752 + -1.2 400,806 + -0.6 400,807 - -1.5 400,807 - -2.9 400,810 + -1.5 400,810 + -0.2 400,811 - -0.9 400,849 + -1.2 400,850 - +0.4 400,850 - -0.8 400,850 - +0.7 400,850 - +0.8 400,850 - -0.1 400,852 + +0.8 400,874 + -0.5 400,928 + -0.2 400,929 - -3.1 400,930 + +1.8 400,931 - -1.7 400,931 - -0.2 400,931 - -3.6 400,931 - -1.2 400,931 - -1.7 400,931 - -1.8 400,931 - -2.5 400,931 - -0.4 400,931 - -0.9 400,933 + Pf1N1B4_337 0.10 -0.6 400,933 + Pf1N1B4_337 0.10 -1.5 400,934 - Pf1N1B4_337 0.10 -0.8 400,934 - -0.8 400,934 - Pf1N1B4_337 0.10 -2.2 400,934 - Pf1N1B4_337 0.10 -2.5 400,960 - Pf1N1B4_337 0.13 -2.9 400,960 - Pf1N1B4_337 0.13 -1.5 401,216 + Pf1N1B4_337 0.45 +2.4 401,217 - Pf1N1B4_337 0.45 -3.0 401,217 - Pf1N1B4_337 0.45 -2.2 401,264 + Pf1N1B4_337 0.50 -0.2 401,316 + Pf1N1B4_337 0.57 -2.0 401,344 - Pf1N1B4_337 0.60 -0.8 401,386 - Pf1N1B4_337 0.65 -2.2 401,405 + Pf1N1B4_337 0.68 +1.2 401,406 - Pf1N1B4_337 0.68 -0.5 401,406 - Pf1N1B4_337 0.68 -2.3 401,432 + Pf1N1B4_337 0.71 +2.1 401,432 + Pf1N1B4_337 0.71 -2.3 401,655 - -2.2 401,675 - +0.4 401,735 + +2.4 402,084 - Pf1N1B4_338 0.29 +3.4 402,086 - Pf1N1B4_338 0.30 -0.6 402,086 - Pf1N1B4_338 0.30 +1.3 402,145 + Pf1N1B4_338 0.36 -0.7 402,198 + Pf1N1B4_338 0.41 -0.8 402,443 - Pf1N1B4_338 0.65 -0.2 402,474 - +0.8 402,554 - Pf1N1B4_338 0.76 +3.0
Or see this region's nucleotide sequence