Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3197

Experiment: Carbenicillin 2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 2 mg/ml
3,579,844	-		Pf1N1B4_3196	0.34	+2.0
3,579,930	+		Pf1N1B4_3196	0.42	+1.0
3,579,930	+		Pf1N1B4_3196	0.42	+0.4
3,579,930	+		Pf1N1B4_3196	0.42	+0.8
3,579,930	+		Pf1N1B4_3196	0.42	+2.0
3,579,930	+		Pf1N1B4_3196	0.42	-2.7
3,579,930	+		Pf1N1B4_3196	0.42	-1.0
3,579,931	-		Pf1N1B4_3196	0.42	-2.3
3,579,931	-		Pf1N1B4_3196	0.42	+1.6
3,579,931	-		Pf1N1B4_3196	0.42	-0.6
3,579,931	-		Pf1N1B4_3196	0.42	-0.3
3,579,931	-		Pf1N1B4_3196	0.42	-0.6
3,579,931	-		Pf1N1B4_3196	0.42	-0.6
3,579,952	+		Pf1N1B4_3196	0.44	+1.0
3,579,953	-		Pf1N1B4_3196	0.44	-0.6
3,579,953	-		Pf1N1B4_3196	0.44	-1.0
3,580,181	+		Pf1N1B4_3196	0.64	+0.2
3,580,181	+		Pf1N1B4_3196	0.64	+0.7
3,580,181	+		Pf1N1B4_3196	0.64	+0.0
3,580,182	-		Pf1N1B4_3196	0.64	+0.6
3,580,182	-		Pf1N1B4_3196	0.64	-0.5
3,580,182	-		Pf1N1B4_3196	0.64	+0.4
3,580,182	-		Pf1N1B4_3196	0.64	-1.0
3,580,183	+		Pf1N1B4_3196	0.64	+0.8
3,580,183	+		Pf1N1B4_3196	0.64	+1.0
3,580,190	+		Pf1N1B4_3196	0.65	+1.0
3,580,190	+		Pf1N1B4_3196	0.65	+1.3
3,580,191	-		Pf1N1B4_3196	0.65	+2.0
3,580,273	-		Pf1N1B4_3196	0.72	+0.1
3,580,273	-		Pf1N1B4_3196	0.72	-2.2
3,580,273	-		Pf1N1B4_3196	0.72	+0.0
3,580,273	-				+0.0
3,580,361	-		Pf1N1B4_3196	0.79	+0.2
3,580,412	-		Pf1N1B4_3196	0.84	-1.4
3,580,412	-		Pf1N1B4_3196	0.84	-0.5
3,580,495	-				-0.3
3,580,523	+				-1.1
3,580,523	+				+1.0
3,580,524	-				-0.4
3,580,524	-				-1.3
3,580,537	-				-1.8
3,580,537	-				+1.6
3,580,537	-				-1.3
3,580,537	-				-1.8
3,580,593	+				+0.3
3,580,593	+				-2.0
3,580,594	-				-1.6
3,580,594	-				-1.7
3,580,687	-				-1.0
3,580,719	+				-1.3
3,580,719	+				-2.3
3,580,974	+		Pf1N1B4_3197	0.24	-2.3
3,580,974	+		Pf1N1B4_3197	0.24	-1.2
3,581,123	-		Pf1N1B4_3197	0.38	-1.3
3,581,319	-		Pf1N1B4_3197	0.56	-1.0
3,581,319	-		Pf1N1B4_3197	0.56	-3.7
3,581,334	+		Pf1N1B4_3197	0.57	-0.2
3,581,334	+		Pf1N1B4_3197	0.57	+0.0
3,581,334	+		Pf1N1B4_3197	0.57	-1.3
3,581,334	+		Pf1N1B4_3197	0.57	-1.2
3,581,335	-		Pf1N1B4_3197	0.57	-1.9
3,581,335	-		Pf1N1B4_3197	0.57	-1.6
3,581,335	-		Pf1N1B4_3197	0.57	-2.2
3,581,335	-		Pf1N1B4_3197	0.57	-1.8
3,581,335	-				-0.6
3,581,335	-		Pf1N1B4_3197	0.57	-0.4
3,581,335	-		Pf1N1B4_3197	0.57	-1.7
3,581,560	+		Pf1N1B4_3197	0.78	-1.4
3,581,560	+		Pf1N1B4_3197	0.78	-0.6
3,581,560	+		Pf1N1B4_3197	0.78	-0.3
3,581,560	+		Pf1N1B4_3197	0.78	-1.7
3,581,560	+		Pf1N1B4_3197	0.78	-1.3
3,581,560	+				-1.3
3,581,561	-		Pf1N1B4_3197	0.78	-1.3
3,581,561	-		Pf1N1B4_3197	0.78	+0.3
3,581,561	-		Pf1N1B4_3197	0.78	-1.0
3,581,561	-		Pf1N1B4_3197	0.78	-1.0
3,581,850	+				-1.6
3,582,475	+				-1.6
3,582,475	+				-0.6
3,582,476	-				-0.6
3,582,476	-				-0.3
3,582,479	+				-1.0
3,582,480	-				-0.7
3,582,480	-				+0.5
3,582,480	-				+0.2
3,582,480	-				-0.4
3,582,480	-				+1.3
3,582,658	+		Pf1N1B4_3199	0.74	+2.2
3,582,658	+		Pf1N1B4_3199	0.74	+1.3
3,582,658	+				+2.0
3,582,659	-				+3.3
3,582,659	-		Pf1N1B4_3199	0.74	+0.3
3,582,659	-		Pf1N1B4_3199	0.74	-0.6
3,582,659	-		Pf1N1B4_3199	0.74	+0.0
3,582,659	-		Pf1N1B4_3199	0.74	-1.8
3,582,659	-		Pf1N1B4_3199	0.74	+0.9
3,582,659	-		Pf1N1B4_3199	0.74	-0.5
3,582,659	-		Pf1N1B4_3199	0.74	+0.4
3,582,659	-				+1.0
3,582,676	+		Pf1N1B4_3199	0.81	+0.1
3,582,676	+		Pf1N1B4_3199	0.81	+1.6
3,582,676	+		Pf1N1B4_3199	0.81	-0.7
3,582,677	-		Pf1N1B4_3199	0.82	-1.0
3,582,677	-		Pf1N1B4_3199	0.82	+0.1
3,582,677	-		Pf1N1B4_3199	0.82	+0.4
3,582,677	-		Pf1N1B4_3199	0.82	-1.2
3,582,677	-		Pf1N1B4_3199	0.82	-0.3
3,582,712	+				-0.8
3,582,712	+				+0.0
3,582,712	+				+1.6
3,582,713	-				+0.6
3,582,713	-				+1.0
3,582,713	-				+0.6
3,582,713	-				+0.1
3,582,713	-				-1.0
3,582,713	-				+0.8
3,582,713	-				-0.2
3,582,751	+				+1.3
3,582,752	-				+0.4
3,582,752	-				-0.4
3,582,767	+				-1.8
3,582,767	+				+0.7
3,582,767	+				+1.0
3,582,767	+				+0.7
3,582,768	-				-0.4
3,582,792	+				-2.3