Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3180

Experiment: Carbenicillin 2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 2 mg/ml
3,560,894	+		Pf1N1B4_3179	0.35	+0.0
3,560,895	-		Pf1N1B4_3179	0.36	-0.6
3,560,895	-		Pf1N1B4_3179	0.36	+0.2
3,560,895	-		Pf1N1B4_3179	0.36	-1.0
3,560,915	+		Pf1N1B4_3179	0.38	+0.7
3,560,929	+				+0.0
3,560,961	-		Pf1N1B4_3179	0.44	-0.6
3,560,961	-		Pf1N1B4_3179	0.44	-0.8
3,561,053	+		Pf1N1B4_3179	0.56	+1.0
3,561,053	+		Pf1N1B4_3179	0.56	-0.6
3,561,054	-		Pf1N1B4_3179	0.56	+0.3
3,561,054	-		Pf1N1B4_3179	0.56	+1.0
3,561,054	-		Pf1N1B4_3179	0.56	+0.3
3,561,253	+		Pf1N1B4_3179	0.81	-0.0
3,561,253	+		Pf1N1B4_3179	0.81	-0.6
3,561,326	+				+0.6
3,561,326	+				-1.3
3,561,327	-				-1.0
3,561,327	-				-1.1
3,561,327	-				+0.2
3,561,412	-				-0.6
3,561,421	+				-2.3
3,561,421	+				+1.0
3,561,422	-				+0.7
3,561,422	-				-0.9
3,561,444	+				+0.9
3,561,444	+				-0.6
3,561,444	+				-1.3
3,561,444	+				+0.8
3,561,444	+				+1.3
3,561,444	+				-0.3
3,561,444	+				+0.0
3,561,444	+				+0.7
3,561,445	-				-0.2
3,561,445	-				-0.2
3,561,445	-				+2.0
3,561,445	-				+0.4
3,561,445	-				-0.6
3,561,445	-				+0.2
3,561,445	-				-0.2
3,561,445	-				-1.0
3,561,445	-				+0.0
3,561,445	-				+0.0
3,561,445	-				+0.6
3,561,445	-				+0.5
3,561,445	-				-0.5
3,561,445	-				-1.0
3,561,445	-				-0.6
3,561,445	-				+0.8
3,561,445	-				+1.4
3,561,445	-				-0.7
3,561,445	-				+0.1
3,561,445	-				+1.7
3,561,445	-				-0.0
3,561,450	+				+1.1
3,561,451	-				+1.0
3,561,451	-				-0.4
3,561,462	+				-1.1
3,561,462	+				-0.2
3,561,463	-				+0.6
3,561,463	-				+0.1
3,561,463	-				+0.4
3,561,463	-				+0.2
3,561,463	-				-0.0
3,561,470	-				+0.0
3,561,470	-				+0.2
3,561,470	-				-1.2
3,561,470	-				-1.2
3,561,472	+				-0.6
3,561,473	-				+0.2
3,561,473	-				-0.2
3,561,473	-				-0.7
3,561,473	-				+0.8
3,561,479	-				+0.2
3,561,479	-				-2.1
3,561,513	+				-1.4
3,561,514	-				+2.6
3,561,514	-				-1.5
3,561,520	+				+1.0
3,561,521	-				-0.2
3,561,521	-				+1.4
3,561,523	+				+0.0
3,561,523	+				-1.6
3,561,523	+				+0.6
3,561,524	-				+1.0
3,561,524	-				-1.0
3,561,524	-				-1.6
3,561,524	-				-1.6
3,561,524	-				+0.8
3,561,524	-				+0.5
3,561,524	-				+1.3
3,561,524	-				+1.3
3,561,524	-				+0.6
3,561,524	-				-1.4
3,561,547	+				+1.0
3,561,548	-				-0.1
3,561,597	+				+0.4
3,561,597	+				+1.0
3,561,598	-				-1.2
3,561,598	-				+0.9
3,561,598	-				+0.0
3,561,599	+				+1.3
3,561,599	+				+0.7
3,561,599	+				+1.0
3,561,600	-				-1.0
3,561,600	-				+0.5
3,561,600	-				+0.6
3,561,600	-				-0.5
3,561,623	+				-0.6
3,561,623	+				+2.0
3,561,623	+				-0.6
3,561,624	-				-0.1
3,561,624	-				+0.3
3,561,624	-				+1.4
3,561,624	-				+0.0
3,561,681	+				-0.6
3,561,682	-				+0.7
3,561,878	+				-0.1
3,561,878	+				-0.2
3,561,878	+				-0.4
3,561,879	-				-0.1
3,561,879	-				-0.8
3,561,879	-				-1.4
3,561,879	-				+1.6
3,561,879	-				-0.3
3,561,879	-				+2.4
3,561,879	-				-0.1
3,561,879	-				+0.0
3,561,879	-				+1.5
3,561,879	-				-1.3
3,561,879	-				+0.0
3,561,879	-				+1.2
3,561,879	-				+1.0
3,561,879	-				+1.3
3,561,978	+		Pf1N1B4_3180	0.12	+1.0
3,561,978	+		Pf1N1B4_3180	0.12	+0.2
3,561,979	-		Pf1N1B4_3180	0.12	-0.3
3,561,979	-		Pf1N1B4_3180	0.12	+0.3
3,561,979	-		Pf1N1B4_3180	0.12	-0.5
3,561,979	-		Pf1N1B4_3180	0.12	+0.7
3,561,979	-		Pf1N1B4_3180	0.12	+0.4
3,561,979	-		Pf1N1B4_3180	0.12	-0.9
3,562,025	-		Pf1N1B4_3180	0.15	+1.3
3,562,025	-		Pf1N1B4_3180	0.15	-0.5
3,562,025	-		Pf1N1B4_3180	0.15	-1.8
3,562,025	-		Pf1N1B4_3180	0.15	+0.5
3,562,094	-		Pf1N1B4_3180	0.19	-1.3
3,562,094	-		Pf1N1B4_3180	0.19	+0.5
3,562,094	-		Pf1N1B4_3180	0.19	+0.3
3,562,102	+				+1.0
3,562,102	+		Pf1N1B4_3180	0.19	+0.0
3,562,102	+		Pf1N1B4_3180	0.19	+2.4
3,562,102	+		Pf1N1B4_3180	0.19	+1.2
3,562,103	-		Pf1N1B4_3180	0.19	-0.4
3,562,103	-				-0.5
3,562,103	-		Pf1N1B4_3180	0.19	+0.0
3,562,103	-		Pf1N1B4_3180	0.19	+0.7
3,562,103	-		Pf1N1B4_3180	0.19	-0.1
3,562,103	-		Pf1N1B4_3180	0.19	+0.7
3,562,138	+		Pf1N1B4_3180	0.22	+0.8
3,562,139	-		Pf1N1B4_3180	0.22	-0.2
3,562,139	-		Pf1N1B4_3180	0.22	-0.2
3,562,139	-		Pf1N1B4_3180	0.22	+0.5
3,562,139	-		Pf1N1B4_3180	0.22	+0.0
3,562,139	-		Pf1N1B4_3180	0.22	+1.4
3,562,139	-		Pf1N1B4_3180	0.22	-1.8
3,562,139	-		Pf1N1B4_3180	0.22	-1.1
3,562,139	-		Pf1N1B4_3180	0.22	+1.0
3,562,219	+		Pf1N1B4_3180	0.26	+1.6
3,562,219	+		Pf1N1B4_3180	0.26	+0.8
3,562,219	+		Pf1N1B4_3180	0.26	+0.5
3,562,220	-		Pf1N1B4_3180	0.26	+0.1
3,562,220	-		Pf1N1B4_3180	0.26	-1.0
3,562,220	-		Pf1N1B4_3180	0.26	+1.6
3,562,220	-		Pf1N1B4_3180	0.26	+0.3
3,562,332	+		Pf1N1B4_3180	0.33	-1.7
3,562,332	+		Pf1N1B4_3180	0.33	-0.5
3,562,332	+		Pf1N1B4_3180	0.33	+2.6
3,562,435	+		Pf1N1B4_3180	0.39	-1.5
3,562,436	-		Pf1N1B4_3180	0.39	+0.2
3,562,487	+		Pf1N1B4_3180	0.42	-2.1
3,562,488	-		Pf1N1B4_3180	0.42	-0.8
3,562,488	-		Pf1N1B4_3180	0.42	+1.5
3,562,488	-		Pf1N1B4_3180	0.42	+0.6
3,562,617	-		Pf1N1B4_3180	0.50	+1.0
3,562,668	+		Pf1N1B4_3180	0.53	+0.3
3,562,895	-		Pf1N1B4_3180	0.66	+0.0
3,562,931	-		Pf1N1B4_3180	0.69	+0.8
3,563,236	+		Pf1N1B4_3180	0.87	-0.2
3,563,237	-		Pf1N1B4_3180	0.87	+1.0
3,563,237	-		Pf1N1B4_3180	0.87	-0.2
3,563,341	+				+0.1
3,563,341	+				-2.1
3,563,341	+				+1.9
3,563,341	+				+0.4
3,563,342	-				+2.4
3,563,383	+				+0.0
3,563,383	+				-0.2
3,563,383	+				-0.8
3,563,383	+				-1.4
3,563,383	+				+0.1
3,563,383	+				+0.0
3,563,384	-				+1.5
3,563,384	-				+1.0
3,563,384	-				-0.2
3,563,384	-				+3.2
3,563,384	-				+1.6
3,563,384	-				-0.5
3,563,384	-				-0.7
3,563,384	-				+0.6
3,563,384	-				-0.5
3,563,384	-				+0.3
3,563,384	-				+0.5
3,563,440	+				-2.0
3,563,440	+				-0.4
3,563,440	+				+0.4
3,563,440	+				+1.0
3,563,441	-				+0.9
3,563,441	-				-1.0
3,563,441	-				-1.0
3,563,441	-				-0.5
3,563,441	-				-1.4
3,563,441	-				+0.1
3,563,489	+				-0.5
3,563,489	+				+0.2
3,563,490	-				-0.3
3,563,490	-				-0.4
3,563,490	-				+0.2
3,563,562	+				+0.3
3,563,701	+		Pf1N1B4_3181	0.23	-0.3
3,563,702	-		Pf1N1B4_3181	0.23	+0.1
3,563,742	+		Pf1N1B4_3181	0.27	-0.2
3,563,742	+		Pf1N1B4_3181	0.27	+0.6
3,563,742	+		Pf1N1B4_3181	0.27	+0.9
3,563,742	+				-1.3
3,563,743	-		Pf1N1B4_3181	0.27	+1.1
3,563,830	+		Pf1N1B4_3181	0.36	-0.8
3,563,844	+		Pf1N1B4_3181	0.37	+1.0
3,563,844	+		Pf1N1B4_3181	0.37	+0.0
3,563,844	+		Pf1N1B4_3181	0.37	+2.3
3,563,844	+		Pf1N1B4_3181	0.37	-0.3
3,563,845	-		Pf1N1B4_3181	0.37	+0.3
3,563,845	-		Pf1N1B4_3181	0.37	-1.7
3,563,845	-		Pf1N1B4_3181	0.37	-0.8
3,563,862	+		Pf1N1B4_3181	0.39	+1.8
3,563,862	+				+2.0
3,563,862	+		Pf1N1B4_3181	0.39	-0.5
3,563,862	+				+2.6
3,563,863	-		Pf1N1B4_3181	0.39	+0.6
3,563,863	-		Pf1N1B4_3181	0.39	+0.0
3,563,863	-		Pf1N1B4_3181	0.39	-1.5
3,563,863	-		Pf1N1B4_3181	0.39	+1.4
3,563,863	-		Pf1N1B4_3181	0.39	-1.0
3,563,912	+		Pf1N1B4_3181	0.43	+0.1
3,563,912	+		Pf1N1B4_3181	0.43	+1.0
3,563,912	+				+1.8
3,563,912	+				+1.0
3,563,912	+				+1.6
3,563,913	-		Pf1N1B4_3181	0.43	+0.0
3,563,913	-		Pf1N1B4_3181	0.43	+0.6
3,563,976	+		Pf1N1B4_3181	0.50	-0.2
3,563,976	+		Pf1N1B4_3181	0.50	-0.7
3,563,976	+		Pf1N1B4_3181	0.50	+1.4
3,563,977	-		Pf1N1B4_3181	0.50	+0.5
3,563,977	-		Pf1N1B4_3181	0.50	-0.5
3,563,977	-		Pf1N1B4_3181	0.50	+0.6
3,564,106	+		Pf1N1B4_3181	0.62	+0.5
3,564,106	+		Pf1N1B4_3181	0.62	-0.8
3,564,106	+		Pf1N1B4_3181	0.62	+0.3
3,564,159	+		Pf1N1B4_3181	0.67	-0.4
3,564,159	+		Pf1N1B4_3181	0.67	+0.6
3,564,159	+		Pf1N1B4_3181	0.67	+0.6
3,564,159	+		Pf1N1B4_3181	0.67	+1.1
3,564,204	-		Pf1N1B4_3181	0.71	-0.7
3,564,204	-		Pf1N1B4_3181	0.71	-0.4
3,564,204	-		Pf1N1B4_3181	0.71	+0.0
3,564,221	+		Pf1N1B4_3181	0.73	-2.3
3,564,221	+		Pf1N1B4_3181	0.73	-1.0
3,564,222	-		Pf1N1B4_3181	0.73	+1.2
3,564,222	-		Pf1N1B4_3181	0.73	+0.7
3,564,222	-		Pf1N1B4_3181	0.73	+1.0
3,564,251	+		Pf1N1B4_3181	0.76	+0.0
3,564,252	-		Pf1N1B4_3181	0.76	+0.0
3,564,252	-		Pf1N1B4_3181	0.76	+0.8
3,564,354	+		Pf1N1B4_3181	0.86	+0.1
3,564,354	+		Pf1N1B4_3181	0.86	-0.3
3,564,354	+		Pf1N1B4_3181	0.86	+1.6
3,564,355	-		Pf1N1B4_3181	0.86	+0.5
3,564,355	-		Pf1N1B4_3181	0.86	+0.5
3,564,355	-		Pf1N1B4_3181	0.86	+0.5
3,564,355	-		Pf1N1B4_3181	0.86	-0.4
3,564,355	-		Pf1N1B4_3181	0.86	-0.2
3,564,355	-		Pf1N1B4_3181	0.86	+0.3
3,564,435	+				+0.3
3,564,435	+				+1.0
3,564,435	+				-1.4
3,564,435	+				-1.4
3,564,435	+				+0.4
3,564,435	+				-0.1
3,564,435	+				-0.5
3,564,435	+				-0.7
3,564,435	+				-1.0
3,564,435	+				-0.3
3,564,436	-				-0.6
3,564,436	-				+1.5
3,564,456	+				+0.8
3,564,456	+				-1.0
3,564,456	+				-0.5