Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_315

Experiment: Carbenicillin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_314 and Pf1N1B4_315 are separated by 10 nucleotidesPf1N1B4_315 and Pf1N1B4_316 are separated by 501 nucleotides Pf1N1B4_314 - Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1), at 368,694 to 370,751 _314 Pf1N1B4_315 - Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1), at 370,762 to 372,456 _315 Pf1N1B4_316 - Ethanolamine permease, at 372,958 to 374,322 _316 Position (kb) 370 371 372 373Strain fitness (log2 ratio) -2 -1 0 1 2 3at 369.769 kb on + strand, within Pf1N1B4_314at 369.770 kb on - strandat 370.262 kb on + strand, within Pf1N1B4_314at 370.651 kb on - strandat 370.734 kb on - strandat 370.763 kb on + strandat 370.763 kb on + strandat 370.764 kb on - strandat 370.764 kb on - strandat 370.959 kb on - strand, within Pf1N1B4_315at 370.959 kb on - strand, within Pf1N1B4_315at 370.959 kb on - strand, within Pf1N1B4_315at 371.066 kb on + strand, within Pf1N1B4_315at 371.066 kb on + strand, within Pf1N1B4_315at 371.067 kb on - strand, within Pf1N1B4_315at 371.067 kb on - strand, within Pf1N1B4_315at 371.067 kb on - strand, within Pf1N1B4_315at 371.067 kb on - strand, within Pf1N1B4_315at 371.067 kb on - strand, within Pf1N1B4_315at 371.072 kb on + strand, within Pf1N1B4_315at 371.073 kb on - strand, within Pf1N1B4_315at 371.073 kb on - strand, within Pf1N1B4_315at 371.073 kb on - strand, within Pf1N1B4_315at 371.235 kb on - strand, within Pf1N1B4_315at 371.273 kb on - strand, within Pf1N1B4_315at 371.303 kb on + strand, within Pf1N1B4_315at 371.304 kb on - strand, within Pf1N1B4_315at 371.538 kb on - strand, within Pf1N1B4_315at 371.627 kb on + strand, within Pf1N1B4_315at 371.627 kb on + strand, within Pf1N1B4_315at 371.627 kb on + strand, within Pf1N1B4_315at 371.628 kb on - strand, within Pf1N1B4_315at 371.628 kb on - strand, within Pf1N1B4_315at 371.628 kb on - strand, within Pf1N1B4_315at 371.882 kb on + strand, within Pf1N1B4_315at 371.883 kb on - strand, within Pf1N1B4_315at 371.883 kb on - strandat 371.883 kb on - strand, within Pf1N1B4_315at 372.069 kb on - strand, within Pf1N1B4_315at 372.093 kb on - strand, within Pf1N1B4_315at 372.093 kb on - strand, within Pf1N1B4_315at 372.093 kb on - strand, within Pf1N1B4_315at 372.189 kb on - strandat 372.260 kb on + strand, within Pf1N1B4_315at 372.260 kb on + strand, within Pf1N1B4_315at 372.261 kb on - strand, within Pf1N1B4_315at 372.374 kb on + strandat 372.374 kb on + strandat 372.374 kb on + strandat 372.375 kb on - strandat 372.375 kb on - strandat 372.375 kb on - strandat 372.375 kb on - strandat 372.375 kb on - strandat 372.377 kb on + strandat 372.377 kb on + strandat 372.377 kb on + strandat 372.377 kb on + strandat 372.377 kb on + strandat 372.378 kb on - strandat 372.378 kb on - strandat 372.441 kb on - strandat 372.446 kb on + strandat 372.446 kb on + strandat 372.446 kb on + strandat 372.446 kb on + strandat 372.446 kb on + strandat 372.446 kb on + strandat 372.447 kb on - strandat 372.447 kb on - strandat 372.447 kb on - strandat 372.447 kb on - strandat 372.447 kb on - strandat 372.466 kb on + strandat 372.467 kb on - strandat 372.467 kb on - strandat 372.467 kb on - strandat 372.502 kb on + strandat 372.502 kb on + strandat 372.502 kb on + strandat 372.503 kb on - strandat 372.503 kb on - strandat 372.503 kb on - strandat 372.525 kb on + strandat 372.525 kb on + strandat 372.526 kb on - strandat 372.578 kb on - strandat 372.648 kb on + strandat 372.648 kb on + strandat 372.648 kb on + strandat 372.652 kb on + strandat 372.652 kb on + strandat 372.653 kb on - strandat 372.653 kb on - strandat 372.653 kb on - strandat 372.659 kb on + strandat 372.659 kb on + strandat 373.036 kb on + strandat 373.037 kb on - strandat 373.037 kb on - strandat 373.052 kb on - strandat 373.114 kb on + strand, within Pf1N1B4_316at 373.114 kb on + strand, within Pf1N1B4_316at 373.114 kb on + strand, within Pf1N1B4_316at 373.114 kb on + strandat 373.114 kb on + strandat 373.114 kb on + strand, within Pf1N1B4_316at 373.114 kb on + strand, within Pf1N1B4_316at 373.114 kb on + strand, within Pf1N1B4_316at 373.114 kb on + strand, within Pf1N1B4_316at 373.114 kb on + strand, within Pf1N1B4_316at 373.114 kb on + strand, within Pf1N1B4_316at 373.114 kb on + strand, within Pf1N1B4_316at 373.115 kb on - strand, within Pf1N1B4_316at 373.115 kb on - strand, within Pf1N1B4_316at 373.115 kb on - strandat 373.115 kb on - strand, within Pf1N1B4_316at 373.115 kb on - strand, within Pf1N1B4_316at 373.342 kb on + strandat 373.342 kb on + strand, within Pf1N1B4_316at 373.342 kb on + strand, within Pf1N1B4_316at 373.342 kb on + strand, within Pf1N1B4_316at 373.342 kb on + strand, within Pf1N1B4_316at 373.342 kb on + strand, within Pf1N1B4_316at 373.343 kb on - strand, within Pf1N1B4_316at 373.343 kb on - strand, within Pf1N1B4_316at 373.343 kb on - strand, within Pf1N1B4_316at 373.343 kb on - strand, within Pf1N1B4_316at 373.343 kb on - strand, within Pf1N1B4_316at 373.343 kb on - strandat 373.343 kb on - strand, within Pf1N1B4_316

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml
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369,769 + Pf1N1B4_314 0.52 +0.0
369,770 - +0.5
370,262 + Pf1N1B4_314 0.76 -0.4
370,651 - +1.4
370,734 - -0.4
370,763 + -0.7
370,763 + -0.2
370,764 - +0.8
370,764 - +2.9
370,959 - Pf1N1B4_315 0.12 +0.9
370,959 - Pf1N1B4_315 0.12 +2.1
370,959 - Pf1N1B4_315 0.12 +1.1
371,066 + Pf1N1B4_315 0.18 +0.3
371,066 + Pf1N1B4_315 0.18 +0.1
371,067 - Pf1N1B4_315 0.18 +0.8
371,067 - Pf1N1B4_315 0.18 +0.3
371,067 - Pf1N1B4_315 0.18 +1.4
371,067 - Pf1N1B4_315 0.18 +0.6
371,067 - Pf1N1B4_315 0.18 +2.5
371,072 + Pf1N1B4_315 0.18 -1.5
371,073 - Pf1N1B4_315 0.18 +0.6
371,073 - Pf1N1B4_315 0.18 +1.4
371,073 - Pf1N1B4_315 0.18 +0.8
371,235 - Pf1N1B4_315 0.28 +0.3
371,273 - Pf1N1B4_315 0.30 +0.6
371,303 + Pf1N1B4_315 0.32 +1.3
371,304 - Pf1N1B4_315 0.32 +0.0
371,538 - Pf1N1B4_315 0.46 +1.3
371,627 + Pf1N1B4_315 0.51 -0.7
371,627 + Pf1N1B4_315 0.51 +0.5
371,627 + Pf1N1B4_315 0.51 +1.4
371,628 - Pf1N1B4_315 0.51 +1.0
371,628 - Pf1N1B4_315 0.51 +0.8
371,628 - Pf1N1B4_315 0.51 -0.7
371,882 + Pf1N1B4_315 0.66 +2.4
371,883 - Pf1N1B4_315 0.66 -0.7
371,883 - -0.2
371,883 - Pf1N1B4_315 0.66 +0.8
372,069 - Pf1N1B4_315 0.77 -0.9
372,093 - Pf1N1B4_315 0.79 +0.6
372,093 - Pf1N1B4_315 0.79 -0.5
372,093 - Pf1N1B4_315 0.79 -0.7
372,189 - +1.4
372,260 + Pf1N1B4_315 0.88 +0.3
372,260 + Pf1N1B4_315 0.88 +0.4
372,261 - Pf1N1B4_315 0.88 +0.1
372,374 + -0.1
372,374 + -0.2
372,374 + +1.1
372,375 - +0.1
372,375 - -0.5
372,375 - -1.0
372,375 - -1.2
372,375 - -1.2
372,377 + -0.5
372,377 + -0.2
372,377 + -0.2
372,377 + +1.1
372,377 + -1.7
372,378 - -1.3
372,378 - -0.2
372,441 - -1.2
372,446 + +0.8
372,446 + -0.1
372,446 + -0.2
372,446 + +0.8
372,446 + +1.8
372,446 + +0.6
372,447 - +0.6
372,447 - +0.7
372,447 - -1.0
372,447 - +0.7
372,447 - +0.3
372,466 + +0.0
372,467 - +1.6
372,467 - -0.2
372,467 - -1.6
372,502 + +0.7
372,502 + -0.7
372,502 + -0.7
372,503 - +1.4
372,503 - +1.3
372,503 - -0.2
372,525 + +0.3
372,525 + +0.3
372,526 - +1.4
372,578 - +0.0
372,648 + +1.2
372,648 + +0.8
372,648 + +0.8
372,652 + +1.3
372,652 + +0.6
372,653 - +0.6
372,653 - +1.3
372,653 - +1.9
372,659 + -0.2
372,659 + +1.1
373,036 + +0.3
373,037 - -1.2
373,037 - -2.2
373,052 - -0.5
373,114 + Pf1N1B4_316 0.11 -1.2
373,114 + Pf1N1B4_316 0.11 -0.2
373,114 + Pf1N1B4_316 0.11 -0.9
373,114 + -0.2
373,114 + -1.5
373,114 + Pf1N1B4_316 0.11 -0.1
373,114 + Pf1N1B4_316 0.11 -2.0
373,114 + Pf1N1B4_316 0.11 -0.5
373,114 + Pf1N1B4_316 0.11 +0.8
373,114 + Pf1N1B4_316 0.11 +0.5
373,114 + Pf1N1B4_316 0.11 -2.0
373,114 + Pf1N1B4_316 0.11 -0.6
373,115 - Pf1N1B4_316 0.12 +0.8
373,115 - Pf1N1B4_316 0.12 +0.1
373,115 - +2.8
373,115 - Pf1N1B4_316 0.12 -0.5
373,115 - Pf1N1B4_316 0.12 -0.2
373,342 + -1.5
373,342 + Pf1N1B4_316 0.28 -0.6
373,342 + Pf1N1B4_316 0.28 +0.5
373,342 + Pf1N1B4_316 0.28 +0.3
373,342 + Pf1N1B4_316 0.28 -0.7
373,342 + Pf1N1B4_316 0.28 -0.2
373,343 - Pf1N1B4_316 0.28 +0.5
373,343 - Pf1N1B4_316 0.28 +0.2
373,343 - Pf1N1B4_316 0.28 -0.5
373,343 - Pf1N1B4_316 0.28 -0.2
373,343 - Pf1N1B4_316 0.28 -0.4
373,343 - +2.4
373,343 - Pf1N1B4_316 0.28 +0.0

Or see this region's nucleotide sequence