Experiment: Carbenicillin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2146 and Pf1N1B4_2147 are separated by 129 nucleotides Pf1N1B4_2147 and Pf1N1B4_2148 are separated by 317 nucleotides Pf1N1B4_2148 and Pf1N1B4_2149 are separated by 133 nucleotides
Pf1N1B4_2146 - Alanine racemase (EC 5.1.1.1), at 2,456,266 to 2,457,339
_2146
Pf1N1B4_2147 - Putrescine utilization regulator, at 2,457,469 to 2,458,017
_2147
Pf1N1B4_2148 - Cytochrome c5, at 2,458,335 to 2,458,613
_2148
Pf1N1B4_2149 - Acetyl-CoA hydrolase, at 2,458,747 to 2,460,669
_2149
Position (kb)
2457
2458
2459 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2457.325 kb on + strand at 2457.326 kb on - strand at 2457.326 kb on - strand at 2457.326 kb on - strand at 2457.398 kb on + strand at 2457.398 kb on + strand at 2457.398 kb on + strand at 2457.398 kb on + strand at 2457.399 kb on - strand at 2457.402 kb on + strand at 2457.402 kb on + strand at 2457.402 kb on + strand at 2457.403 kb on - strand at 2457.403 kb on - strand at 2457.403 kb on - strand at 2457.433 kb on + strand at 2457.434 kb on - strand at 2457.434 kb on - strand at 2457.434 kb on - strand at 2457.550 kb on - strand, within Pf1N1B4_2147 at 2457.694 kb on + strand, within Pf1N1B4_2147 at 2457.694 kb on + strand, within Pf1N1B4_2147 at 2457.695 kb on - strand, within Pf1N1B4_2147 at 2457.796 kb on + strand, within Pf1N1B4_2147 at 2457.925 kb on + strand, within Pf1N1B4_2147 at 2457.925 kb on + strand, within Pf1N1B4_2147 at 2457.925 kb on + strand at 2457.925 kb on + strand, within Pf1N1B4_2147 at 2457.925 kb on + strand, within Pf1N1B4_2147 at 2457.925 kb on + strand at 2457.925 kb on + strand, within Pf1N1B4_2147 at 2457.925 kb on + strand, within Pf1N1B4_2147 at 2457.926 kb on - strand, within Pf1N1B4_2147 at 2457.926 kb on - strand, within Pf1N1B4_2147 at 2457.928 kb on + strand, within Pf1N1B4_2147 at 2457.928 kb on + strand, within Pf1N1B4_2147 at 2457.928 kb on + strand, within Pf1N1B4_2147 at 2457.928 kb on + strand, within Pf1N1B4_2147 at 2457.928 kb on + strand, within Pf1N1B4_2147 at 2457.928 kb on + strand at 2457.929 kb on - strand, within Pf1N1B4_2147 at 2457.929 kb on - strand, within Pf1N1B4_2147 at 2458.016 kb on - strand at 2458.060 kb on + strand at 2458.060 kb on + strand at 2458.061 kb on - strand at 2458.061 kb on - strand at 2458.061 kb on - strand at 2458.061 kb on - strand at 2458.061 kb on - strand at 2458.061 kb on - strand at 2458.061 kb on - strand at 2458.119 kb on - strand at 2458.124 kb on + strand at 2458.125 kb on - strand at 2458.125 kb on - strand at 2458.125 kb on - strand at 2458.126 kb on + strand at 2458.126 kb on + strand at 2458.126 kb on + strand at 2458.126 kb on + strand at 2458.126 kb on + strand at 2458.126 kb on + strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.127 kb on - strand at 2458.166 kb on - strand at 2458.183 kb on + strand at 2458.183 kb on + strand at 2458.183 kb on + strand at 2458.183 kb on + strand at 2458.183 kb on + strand at 2458.183 kb on + strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.184 kb on - strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.195 kb on + strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.196 kb on - strand at 2458.199 kb on + strand at 2458.199 kb on + strand at 2458.199 kb on + strand at 2458.199 kb on + strand at 2458.199 kb on + strand at 2458.199 kb on + strand at 2458.200 kb on - strand at 2458.200 kb on - strand at 2458.200 kb on - strand at 2458.200 kb on - strand at 2458.200 kb on - strand at 2458.228 kb on + strand at 2458.229 kb on - strand at 2458.274 kb on + strand at 2458.274 kb on + strand at 2458.275 kb on - strand at 2458.280 kb on + strand at 2458.281 kb on - strand at 2458.281 kb on - strand at 2458.281 kb on - strand at 2458.281 kb on - strand at 2458.281 kb on - strand at 2458.611 kb on + strand at 2458.611 kb on + strand at 2458.612 kb on - strand at 2458.612 kb on - strand at 2458.612 kb on - strand at 2458.764 kb on + strand at 2458.765 kb on - strand at 2458.765 kb on - strand at 2458.868 kb on - strand at 2458.909 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml remove 2,457,325 + -0.7 2,457,326 - +2.2 2,457,326 - -0.8 2,457,326 - +0.7 2,457,398 + +1.2 2,457,398 + +1.7 2,457,398 + +0.1 2,457,398 + -1.9 2,457,399 - -0.6 2,457,402 + +1.7 2,457,402 + +1.0 2,457,402 + +1.0 2,457,403 - -1.9 2,457,403 - +0.8 2,457,403 - +0.5 2,457,433 + +0.7 2,457,434 - -0.9 2,457,434 - -1.0 2,457,434 - +1.8 2,457,550 - Pf1N1B4_2147 0.15 +0.2 2,457,694 + Pf1N1B4_2147 0.41 -0.1 2,457,694 + Pf1N1B4_2147 0.41 -1.3 2,457,695 - Pf1N1B4_2147 0.41 -0.8 2,457,796 + Pf1N1B4_2147 0.60 -0.1 2,457,925 + Pf1N1B4_2147 0.83 -0.8 2,457,925 + Pf1N1B4_2147 0.83 -1.3 2,457,925 + -0.3 2,457,925 + Pf1N1B4_2147 0.83 -1.6 2,457,925 + Pf1N1B4_2147 0.83 -0.6 2,457,925 + +1.8 2,457,925 + Pf1N1B4_2147 0.83 -0.2 2,457,925 + Pf1N1B4_2147 0.83 -0.8 2,457,926 - Pf1N1B4_2147 0.83 -1.3 2,457,926 - Pf1N1B4_2147 0.83 -2.1 2,457,928 + Pf1N1B4_2147 0.84 +1.6 2,457,928 + Pf1N1B4_2147 0.84 -1.8 2,457,928 + Pf1N1B4_2147 0.84 -0.1 2,457,928 + Pf1N1B4_2147 0.84 -1.6 2,457,928 + Pf1N1B4_2147 0.84 -0.3 2,457,928 + +0.2 2,457,929 - Pf1N1B4_2147 0.84 +0.5 2,457,929 - Pf1N1B4_2147 0.84 -0.6 2,458,016 - -2.1 2,458,060 + +0.2 2,458,060 + +1.1 2,458,061 - +0.4 2,458,061 - +0.4 2,458,061 - -0.3 2,458,061 - -0.2 2,458,061 - -0.3 2,458,061 - -0.6 2,458,061 - -1.6 2,458,119 - +0.0 2,458,124 + -1.0 2,458,125 - +0.1 2,458,125 - -1.4 2,458,125 - +0.8 2,458,126 + -0.2 2,458,126 + +0.9 2,458,126 + -2.3 2,458,126 + -1.8 2,458,126 + +1.0 2,458,126 + +1.8 2,458,127 - -0.4 2,458,127 - -0.8 2,458,127 - +2.2 2,458,127 - -0.9 2,458,127 - +1.2 2,458,127 - +0.6 2,458,127 - +0.7 2,458,127 - -0.9 2,458,127 - -0.3 2,458,127 - +0.3 2,458,127 - -1.8 2,458,127 - +0.1 2,458,127 - +0.2 2,458,127 - +0.2 2,458,127 - +1.4 2,458,127 - -0.3 2,458,127 - -0.1 2,458,127 - -0.1 2,458,127 - -0.3 2,458,127 - +1.2 2,458,127 - -1.8 2,458,127 - -0.9 2,458,127 - +0.6 2,458,127 - -0.1 2,458,127 - -0.3 2,458,127 - +0.2 2,458,127 - +0.7 2,458,127 - +0.4 2,458,127 - +0.1 2,458,127 - -1.5 2,458,127 - +0.7 2,458,166 - -0.8 2,458,183 + +0.2 2,458,183 + -1.6 2,458,183 + -1.5 2,458,183 + -3.2 2,458,183 + +1.6 2,458,183 + -0.3 2,458,184 - +1.7 2,458,184 - -0.4 2,458,184 - -1.2 2,458,184 - +0.5 2,458,184 - +1.0 2,458,184 - +0.2 2,458,184 - -0.5 2,458,184 - +2.4 2,458,184 - +0.7 2,458,184 - -1.0 2,458,195 + +0.6 2,458,195 + -1.0 2,458,195 + -0.0 2,458,195 + +1.5 2,458,195 + +0.2 2,458,195 + -0.6 2,458,195 + -1.0 2,458,195 + +0.4 2,458,195 + +0.1 2,458,195 + -0.1 2,458,195 + -1.8 2,458,195 + +0.9 2,458,195 + -1.6 2,458,195 + +2.2 2,458,195 + -0.2 2,458,195 + -2.7 2,458,195 + -0.8 2,458,195 + +0.7 2,458,195 + -0.8 2,458,195 + +1.2 2,458,195 + -2.2 2,458,195 + -0.3 2,458,195 + +0.6 2,458,195 + -1.9 2,458,195 + -0.8 2,458,195 + +1.2 2,458,195 + -1.1 2,458,195 + -2.7 2,458,195 + -1.3 2,458,195 + -0.3 2,458,195 + -0.8 2,458,195 + -1.7 2,458,195 + -1.2 2,458,195 + -0.1 2,458,195 + +1.5 2,458,196 - -1.8 2,458,196 - +1.8 2,458,196 - +2.4 2,458,196 - +0.5 2,458,196 - -1.2 2,458,196 - -1.0 2,458,196 - +0.2 2,458,196 - -1.9 2,458,196 - +1.2 2,458,196 - +1.7 2,458,196 - -0.1 2,458,196 - -1.6 2,458,196 - +0.5 2,458,196 - +0.2 2,458,196 - -0.3 2,458,196 - +1.2 2,458,196 - +0.4 2,458,196 - -1.4 2,458,196 - +0.2 2,458,196 - +0.2 2,458,196 - -0.7 2,458,196 - +1.0 2,458,196 - -0.8 2,458,196 - -0.2 2,458,196 - +0.0 2,458,196 - +0.2 2,458,196 - +0.4 2,458,196 - -0.3 2,458,196 - -0.7 2,458,199 + +0.2 2,458,199 + -1.5 2,458,199 + +0.7 2,458,199 + +0.2 2,458,199 + +0.8 2,458,199 + -0.5 2,458,200 - -0.3 2,458,200 - -1.3 2,458,200 - +0.5 2,458,200 - -1.9 2,458,200 - -0.8 2,458,228 + +0.9 2,458,229 - -0.1 2,458,274 + +0.2 2,458,274 + +0.7 2,458,275 - +0.2 2,458,280 + -0.8 2,458,281 - +1.2 2,458,281 - +1.4 2,458,281 - -0.9 2,458,281 - +0.8 2,458,281 - -1.0 2,458,611 + -0.3 2,458,611 + -2.1 2,458,612 - +1.1 2,458,612 - +0.2 2,458,612 - +0.5 2,458,764 + +1.2 2,458,765 - -0.3 2,458,765 - +0.7 2,458,868 - +0.5 2,458,909 + +0.6
Or see this region's nucleotide sequence