Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2008

Experiment: Carbenicillin 2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 2 mg/ml
2,291,954	+		Pf1N1B4_2007	0.72	+1.3
2,291,954	+		Pf1N1B4_2007	0.72	-2.2
2,291,954	+		Pf1N1B4_2007	0.72	-0.1
2,291,955	-		Pf1N1B4_2007	0.72	-0.1
2,291,955	-		Pf1N1B4_2007	0.72	-0.3
2,291,955	-		Pf1N1B4_2007	0.72	+1.4
2,292,048	-		Pf1N1B4_2007	0.75	-0.2
2,292,201	+		Pf1N1B4_2007	0.80	-0.3
2,292,202	-		Pf1N1B4_2007	0.80	-0.7
2,292,354	-		Pf1N1B4_2007	0.86	+1.9
2,292,354	-		Pf1N1B4_2007	0.86	+0.7
2,292,354	-		Pf1N1B4_2007	0.86	-1.0
2,292,474	-		Pf1N1B4_2007	0.90	-2.3
2,292,489	-				+1.0
2,292,489	-				+0.3
2,292,489	-				+3.8
2,292,489	-				+0.8
2,292,489	-				-1.6
2,292,489	-				+0.6
2,292,489	-				-0.3
2,292,512	+				+0.4
2,292,513	-				-0.2
2,292,513	-				-2.4
2,292,692	+				+0.7
2,292,762	-				+1.3
2,292,762	-				+0.1
2,292,762	-				+0.8
2,292,762	-				-0.3
2,292,803	-				-1.4
2,292,803	-				-0.6
2,292,803	-				-1.7
2,292,803	-				+0.1
2,292,803	-				+0.5
2,292,803	-				-0.1
2,292,803	-				-1.4
2,292,803	-				-0.2
2,292,842	-				-0.9
2,292,842	-				+0.3
2,292,842	-				-0.9
2,292,873	+				+0.3
2,292,876	+				-0.7
2,292,876	+				-0.3
2,292,876	+				+0.8
2,292,877	-				-0.3
2,292,877	-				-0.7
2,292,877	-				-1.2
2,292,878	+				+0.9
2,292,879	-				-1.1
2,292,879	-				+1.3
2,292,879	-				+2.1
2,292,882	+				-1.7
2,292,882	+				+0.1
2,292,882	+				-0.1
2,292,893	+				+0.1
2,292,894	-				-0.1
2,292,894	-				-2.7
2,292,894	-				-0.1
2,292,894	-				-1.1
2,292,894	-				+0.3
2,292,894	-				-1.5
2,292,894	-				+0.3
2,292,894	-				-0.6
2,292,914	+				+0.6
2,292,914	+				-0.2
2,293,212	+		Pf1N1B4_2008	0.32	-0.3
2,293,212	+		Pf1N1B4_2008	0.32	-1.4
2,293,213	-		Pf1N1B4_2008	0.32	-0.1
2,293,244	+		Pf1N1B4_2008	0.36	-2.9
2,293,244	+		Pf1N1B4_2008	0.36	-0.2
2,293,244	+		Pf1N1B4_2008	0.36	-1.7
2,293,244	+		Pf1N1B4_2008	0.36	-1.3
2,293,244	+		Pf1N1B4_2008	0.36	-1.7
2,293,244	+		Pf1N1B4_2008	0.36	-1.6
2,293,244	+		Pf1N1B4_2008	0.36	-1.6
2,293,244	+		Pf1N1B4_2008	0.36	+0.3
2,293,244	+		Pf1N1B4_2008	0.36	-0.4
2,293,244	+		Pf1N1B4_2008	0.36	-1.9
2,293,244	+		Pf1N1B4_2008	0.36	-0.3
2,293,245	-		Pf1N1B4_2008	0.36	-1.1
2,293,245	-		Pf1N1B4_2008	0.36	-2.2
2,293,245	-		Pf1N1B4_2008	0.36	-0.3
2,293,245	-		Pf1N1B4_2008	0.36	-0.7
2,293,245	-		Pf1N1B4_2008	0.36	-2.1
2,293,245	-		Pf1N1B4_2008	0.36	-2.7
2,293,245	-		Pf1N1B4_2008	0.36	-0.7
2,293,332	+		Pf1N1B4_2008	0.46	-2.4
2,293,332	+		Pf1N1B4_2008	0.46	-2.1
2,293,332	+		Pf1N1B4_2008	0.46	+0.3
2,293,332	+		Pf1N1B4_2008	0.46	-1.1
2,293,332	+		Pf1N1B4_2008	0.46	-0.2
2,293,332	+		Pf1N1B4_2008	0.46	-1.1
2,293,332	+		Pf1N1B4_2008	0.46	+0.1
2,293,333	-		Pf1N1B4_2008	0.46	-3.2
2,293,333	-		Pf1N1B4_2008	0.46	-1.1
2,293,333	-		Pf1N1B4_2008	0.46	-1.1
2,293,333	-		Pf1N1B4_2008	0.46	-1.6
2,293,333	-		Pf1N1B4_2008	0.46	+0.3
2,293,333	-		Pf1N1B4_2008	0.46	-0.3
2,293,390	+		Pf1N1B4_2008	0.53	-2.2
2,293,390	+		Pf1N1B4_2008	0.53	+0.3
2,293,390	+		Pf1N1B4_2008	0.53	-2.1
2,293,410	+		Pf1N1B4_2008	0.55	-0.3
2,293,411	-		Pf1N1B4_2008	0.55	-3.2
2,293,475	+		Pf1N1B4_2008	0.63	-2.2
2,293,475	+		Pf1N1B4_2008	0.63	-2.6
2,293,475	+		Pf1N1B4_2008	0.63	-1.7
2,293,475	+		Pf1N1B4_2008	0.63	-0.3
2,293,475	+		Pf1N1B4_2008	0.63	-1.6
2,293,475	+		Pf1N1B4_2008	0.63	-2.7
2,293,475	+		Pf1N1B4_2008	0.63	-2.2
2,293,476	-		Pf1N1B4_2008	0.63	+0.3
2,293,476	-		Pf1N1B4_2008	0.63	+0.7
2,293,476	-		Pf1N1B4_2008	0.63	-2.2
2,293,632	+		Pf1N1B4_2008	0.81	-0.9
2,293,632	+		Pf1N1B4_2008	0.81	-1.4
2,293,632	+		Pf1N1B4_2008	0.81	-0.9
2,293,632	+		Pf1N1B4_2008	0.81	+0.9
2,293,632	+		Pf1N1B4_2008	0.81	-1.1
2,293,632	+		Pf1N1B4_2008	0.81	-2.7
2,293,632	+		Pf1N1B4_2008	0.81	-1.6
2,293,632	+		Pf1N1B4_2008	0.81	-2.2
2,293,632	+		Pf1N1B4_2008	0.81	-0.3
2,293,633	-		Pf1N1B4_2008	0.81	-1.6
2,293,633	-		Pf1N1B4_2008	0.81	-1.2
2,293,633	-				+1.3
2,293,633	-		Pf1N1B4_2008	0.81	-0.9
2,293,633	-		Pf1N1B4_2008	0.81	-1.7
2,293,634	+		Pf1N1B4_2008	0.81	-1.2
2,293,635	-		Pf1N1B4_2008	0.81	-2.1
2,293,666	+		Pf1N1B4_2008	0.85	-1.6
2,293,946	-				+0.8
2,293,946	-				-0.7
2,293,946	-				+0.5
2,294,014	+				-0.1
2,294,014	+				-1.0
2,294,014	+				+1.7
2,294,014	+				+0.1
2,294,014	+				+1.7
2,294,014	+				-1.9
2,294,014	+				-0.3
2,294,014	+				-0.3
2,294,015	-				-1.1
2,294,015	-				-0.5
2,294,015	-				+0.7
2,294,015	-				+1.3
2,294,015	-				-1.3
2,294,015	-				-1.7
2,294,015	-				-2.1
2,294,015	-				-1.6
2,294,015	-				+0.1
2,294,021	+				-0.4
2,294,021	+				-1.4
2,294,021	+				-0.5
2,294,021	+				-0.7
2,294,021	+				+0.3
2,294,021	+				+1.0
2,294,021	+				+0.3
2,294,021	+				-0.6
2,294,021	+				-1.0
2,294,022	-				+0.8
2,294,022	-				-1.6
2,294,022	-				-0.4
2,294,022	-				+0.1
2,294,022	-				-1.3
2,294,031	-				+2.3
2,294,167	+				-0.3
2,294,211	+				+0.8
2,294,212	-				+1.3
2,294,458	+		Pf1N1B4_2009	0.27	-1.2
2,294,459	-		Pf1N1B4_2009	0.27	-1.0
2,294,459	-		Pf1N1B4_2009	0.27	-0.3
2,294,531	+		Pf1N1B4_2009	0.35	-0.1
2,294,532	-		Pf1N1B4_2009	0.35	-1.6
2,294,532	-		Pf1N1B4_2009	0.35	-0.6
2,294,532	-		Pf1N1B4_2009	0.35	-2.3
2,294,532	-		Pf1N1B4_2009	0.35	+0.1
2,294,585	+		Pf1N1B4_2009	0.40	-1.1
2,294,586	-		Pf1N1B4_2009	0.40	+1.3