Experiment: Carbenicillin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_140 and Pf1N1B4_141 are separated by 272 nucleotides Pf1N1B4_141 and Pf1N1B4_142 are separated by 210 nucleotides
Pf1N1B4_140 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 157,242 to 158,129
_140
Pf1N1B4_141 - PvdE, pyoverdine ABC export system, fused ATPase and permease components, at 158,402 to 160,051
_141
Pf1N1B4_142 - TonB-dependent siderophore receptor precursor, at 160,262 to 162,742
_142
Position (kb) 158
159
160
161 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 157.542 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.743 kb on + strand, within Pf1N1B4_140 at 157.744 kb on - strand at 157.831 kb on - strand, within Pf1N1B4_140 at 157.848 kb on + strand, within Pf1N1B4_140 at 157.921 kb on - strand, within Pf1N1B4_140 at 157.921 kb on - strand, within Pf1N1B4_140 at 157.953 kb on + strand, within Pf1N1B4_140 at 157.953 kb on + strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 158.113 kb on + strand at 158.215 kb on + strand at 158.230 kb on - strand at 158.230 kb on - strand at 158.314 kb on + strand at 158.315 kb on - strand at 158.335 kb on + strand at 158.336 kb on - strand at 158.365 kb on + strand at 158.645 kb on + strand, within Pf1N1B4_141 at 158.645 kb on + strand, within Pf1N1B4_141 at 158.645 kb on + strand, within Pf1N1B4_141 at 158.645 kb on + strand, within Pf1N1B4_141 at 158.646 kb on - strand, within Pf1N1B4_141 at 158.769 kb on + strand, within Pf1N1B4_141 at 158.770 kb on - strand, within Pf1N1B4_141 at 158.770 kb on - strand, within Pf1N1B4_141 at 158.878 kb on - strand, within Pf1N1B4_141 at 158.878 kb on - strand, within Pf1N1B4_141 at 159.116 kb on - strand, within Pf1N1B4_141 at 159.116 kb on - strand, within Pf1N1B4_141 at 159.245 kb on + strand, within Pf1N1B4_141 at 159.245 kb on + strand, within Pf1N1B4_141 at 159.245 kb on + strand, within Pf1N1B4_141 at 159.246 kb on - strand, within Pf1N1B4_141 at 159.384 kb on - strand, within Pf1N1B4_141 at 159.569 kb on + strand, within Pf1N1B4_141 at 159.570 kb on - strand, within Pf1N1B4_141 at 159.668 kb on + strand, within Pf1N1B4_141 at 159.669 kb on - strand, within Pf1N1B4_141 at 159.669 kb on - strand, within Pf1N1B4_141 at 159.669 kb on - strand, within Pf1N1B4_141 at 159.671 kb on + strand, within Pf1N1B4_141 at 159.672 kb on - strand, within Pf1N1B4_141 at 159.729 kb on - strand, within Pf1N1B4_141 at 160.068 kb on - strand at 160.145 kb on - strand at 160.145 kb on - strand at 160.145 kb on - strand at 160.145 kb on - strand at 160.239 kb on - strand at 160.382 kb on + strand at 160.382 kb on + strand at 160.382 kb on + strand at 160.382 kb on + strand at 160.478 kb on + strand at 160.478 kb on + strand at 160.479 kb on - strand at 160.479 kb on - strand at 160.479 kb on - strand at 160.479 kb on - strand at 160.851 kb on - strand, within Pf1N1B4_142 at 160.874 kb on + strand, within Pf1N1B4_142 at 160.874 kb on + strand, within Pf1N1B4_142 at 160.949 kb on + strand, within Pf1N1B4_142 at 160.949 kb on + strand, within Pf1N1B4_142 at 160.950 kb on - strand, within Pf1N1B4_142 at 160.989 kb on - strand, within Pf1N1B4_142 at 160.989 kb on - strand, within Pf1N1B4_142 at 160.989 kb on - strand, within Pf1N1B4_142
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 2 mg/ml remove 157,542 + Pf1N1B4_140 0.34 +1.4 157,677 + Pf1N1B4_140 0.49 -1.5 157,677 + Pf1N1B4_140 0.49 -1.2 157,677 + Pf1N1B4_140 0.49 -0.2 157,677 + Pf1N1B4_140 0.49 +0.1 157,743 + Pf1N1B4_140 0.56 +0.6 157,744 - -0.2 157,831 - Pf1N1B4_140 0.66 -0.0 157,848 + Pf1N1B4_140 0.68 +0.8 157,921 - Pf1N1B4_140 0.76 -0.2 157,921 - Pf1N1B4_140 0.76 +0.0 157,953 + Pf1N1B4_140 0.80 -0.2 157,953 + Pf1N1B4_140 0.80 -1.5 157,954 - Pf1N1B4_140 0.80 -0.5 157,954 - Pf1N1B4_140 0.80 -1.0 157,954 - Pf1N1B4_140 0.80 -1.2 157,954 - Pf1N1B4_140 0.80 +0.3 158,113 + +0.8 158,215 + -0.8 158,230 - +0.8 158,230 - +0.1 158,314 + +0.7 158,315 - -0.5 158,335 + -0.2 158,336 - -0.2 158,365 + -0.6 158,645 + Pf1N1B4_141 0.15 +2.1 158,645 + Pf1N1B4_141 0.15 +2.8 158,645 + Pf1N1B4_141 0.15 -1.1 158,645 + Pf1N1B4_141 0.15 +0.8 158,646 - Pf1N1B4_141 0.15 +0.2 158,769 + Pf1N1B4_141 0.22 -0.4 158,770 - Pf1N1B4_141 0.22 -1.0 158,770 - Pf1N1B4_141 0.22 +0.5 158,878 - Pf1N1B4_141 0.29 +0.3 158,878 - Pf1N1B4_141 0.29 -0.1 159,116 - Pf1N1B4_141 0.43 -0.2 159,116 - Pf1N1B4_141 0.43 +0.7 159,245 + Pf1N1B4_141 0.51 +0.5 159,245 + Pf1N1B4_141 0.51 +1.2 159,245 + Pf1N1B4_141 0.51 -2.1 159,246 - Pf1N1B4_141 0.51 +0.8 159,384 - Pf1N1B4_141 0.60 +0.1 159,569 + Pf1N1B4_141 0.71 +2.6 159,570 - Pf1N1B4_141 0.71 -0.4 159,668 + Pf1N1B4_141 0.77 +1.2 159,669 - Pf1N1B4_141 0.77 +1.4 159,669 - Pf1N1B4_141 0.77 -0.2 159,669 - Pf1N1B4_141 0.77 +1.5 159,671 + Pf1N1B4_141 0.77 +0.1 159,672 - Pf1N1B4_141 0.77 -0.2 159,729 - Pf1N1B4_141 0.80 +0.1 160,068 - +0.4 160,145 - -0.7 160,145 - -0.2 160,145 - +1.1 160,145 - -1.5 160,239 - +0.8 160,382 + +0.8 160,382 + -1.5 160,382 + -2.0 160,382 + +2.4 160,478 + -0.2 160,478 + -0.0 160,479 - +1.7 160,479 - -1.8 160,479 - +0.7 160,479 - +1.0 160,851 - Pf1N1B4_142 0.24 -0.3 160,874 + Pf1N1B4_142 0.25 +0.5 160,874 + Pf1N1B4_142 0.25 +0.4 160,949 + Pf1N1B4_142 0.28 +0.2 160,949 + Pf1N1B4_142 0.28 -1.8 160,950 - Pf1N1B4_142 0.28 -2.5 160,989 - Pf1N1B4_142 0.29 -1.8 160,989 - Pf1N1B4_142 0.29 +0.1 160,989 - Pf1N1B4_142 0.29 +0.6
Or see this region's nucleotide sequence