Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1242

Experiment: Carbenicillin 2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 2 mg/ml
1,419,202	+		Pf1N1B4_1240	0.90	-1.0
1,419,203	-				+0.5
1,419,462	-				+0.3
1,419,477	+				+0.3
1,419,487	+				+2.1
1,419,488	-				+1.9
1,419,505	+				-0.2
1,419,505	+				+0.4
1,419,505	+				+2.1
1,419,506	-				-0.4
1,419,677	+		Pf1N1B4_1241	0.26	-2.7
1,419,678	-		Pf1N1B4_1241	0.26	+0.1
1,419,678	-				+0.1
1,419,678	-		Pf1N1B4_1241	0.26	-0.4
1,419,678	-		Pf1N1B4_1241	0.26	-1.2
1,419,680	+		Pf1N1B4_1241	0.27	+0.7
1,419,680	+		Pf1N1B4_1241	0.27	-1.4
1,419,680	+		Pf1N1B4_1241	0.27	-0.7
1,419,680	+		Pf1N1B4_1241	0.27	+0.9
1,419,681	-		Pf1N1B4_1241	0.27	+0.5
1,419,681	-				+0.8
1,419,681	-		Pf1N1B4_1241	0.27	-0.4
1,419,681	-		Pf1N1B4_1241	0.27	-0.2
1,419,681	-		Pf1N1B4_1241	0.27	-0.5
1,419,681	-		Pf1N1B4_1241	0.27	+2.5
1,419,704	+		Pf1N1B4_1241	0.30	+1.1
1,419,704	+		Pf1N1B4_1241	0.30	-0.9
1,419,704	+		Pf1N1B4_1241	0.30	+1.7
1,419,704	+		Pf1N1B4_1241	0.30	-1.0
1,419,704	+		Pf1N1B4_1241	0.30	-0.1
1,419,704	+		Pf1N1B4_1241	0.30	-0.3
1,419,704	+		Pf1N1B4_1241	0.30	-0.9
1,419,705	-		Pf1N1B4_1241	0.31	+1.1
1,419,705	-		Pf1N1B4_1241	0.31	-1.7
1,419,705	-		Pf1N1B4_1241	0.31	+1.3
1,419,705	-		Pf1N1B4_1241	0.31	+2.5
1,419,705	-		Pf1N1B4_1241	0.31	-2.0
1,419,705	-				+1.4
1,419,745	+		Pf1N1B4_1241	0.37	+0.7
1,419,745	+				+1.7
1,419,746	-		Pf1N1B4_1241	0.37	-0.4
1,419,746	-		Pf1N1B4_1241	0.37	+0.7
1,419,746	-		Pf1N1B4_1241	0.37	-0.2
1,419,746	-		Pf1N1B4_1241	0.37	+1.6
1,419,746	-		Pf1N1B4_1241	0.37	+1.0
1,419,746	-		Pf1N1B4_1241	0.37	+0.8
1,419,797	+		Pf1N1B4_1241	0.45	+0.9
1,419,798	-		Pf1N1B4_1241	0.45	+0.5
1,420,025	+		Pf1N1B4_1241	0.80	+0.9
1,420,120	+				+1.1
1,420,121	-				-1.2
1,420,150	+				+2.0
1,420,151	-				+0.6
1,420,151	-				+1.1
1,420,154	+				+0.0
1,420,154	+				+0.6
1,420,154	+				+0.6
1,420,154	+				-0.0
1,420,154	+				-0.3
1,420,154	+				-1.1
1,420,154	+				-1.4
1,420,154	+				-1.2
1,420,154	+				-1.2
1,420,155	-				+0.7
1,420,155	-				+3.1
1,420,155	-				+1.8
1,420,155	-				+1.6
1,420,155	-				+1.1
1,420,155	-				+0.6
1,420,155	-				+0.6
1,420,155	-				+1.1
1,420,163	+				+0.3
1,420,163	+				-0.7
1,420,163	+				-0.5
1,420,163	+				-0.3
1,420,163	+				-1.6
1,420,163	+				-0.1
1,420,164	-				+0.1
1,420,164	-				-0.4
1,420,164	-				+2.1
1,420,164	-				-0.9
1,420,164	-				+1.1
1,420,164	-				-0.6
1,420,164	-				+1.4
1,420,164	-				-0.1
1,420,173	-				+0.1
1,420,684	+		Pf1N1B4_1242	0.89	-0.1
1,420,684	+		Pf1N1B4_1242	0.89	+0.6
1,420,684	+		Pf1N1B4_1242	0.89	+0.4
1,420,684	+		Pf1N1B4_1242	0.89	+0.9
1,420,684	+		Pf1N1B4_1242	0.89	+0.6
1,420,684	+		Pf1N1B4_1242	0.89	+1.1
1,420,684	+		Pf1N1B4_1242	0.89	+0.3
1,420,684	+				-1.2
1,420,684	+		Pf1N1B4_1242	0.89	+0.5
1,420,685	-		Pf1N1B4_1242	0.90	+0.1
1,420,685	-		Pf1N1B4_1242	0.90	+1.9
1,420,685	-		Pf1N1B4_1242	0.90	+0.1
1,420,685	-		Pf1N1B4_1242	0.90	+2.1
1,420,685	-		Pf1N1B4_1242	0.90	-1.2
1,420,685	-		Pf1N1B4_1242	0.90	-1.3
1,420,685	-		Pf1N1B4_1242	0.90	-0.2
1,420,685	-		Pf1N1B4_1242	0.90	-0.3
1,420,688	+				+1.1
1,420,688	+				+0.0
1,420,688	+				-0.7
1,420,688	+				+0.1
1,420,778	+				+1.6
1,420,792	-				+1.1
1,420,792	-				+1.5
1,420,799	+				+0.4
1,420,800	-				-2.0
1,420,870	-				+0.1
1,420,992	+				-2.0
1,420,992	+				+0.6
1,420,993	-				+1.1
1,421,035	-				-0.4
1,421,057	-				-0.4
1,421,086	-				+1.0
1,421,086	-				+2.6
1,421,086	-				-0.4
1,421,086	-				-1.0
1,421,143	+				+1.9
1,421,144	-				+2.0
1,421,144	-				+0.1
1,421,144	-				-0.2
1,421,144	-				-0.9
1,421,247	-				+2.7
1,421,335	+				+0.1
1,421,335	+				+0.6
1,421,335	+				-0.4
1,421,336	-				+3.1
1,421,391	+				-1.2
1,421,392	-				-0.3
1,421,518	+		Pf1N1B4_1243	0.10	+0.0
1,421,519	-		Pf1N1B4_1243	0.10	+1.5
1,421,519	-				+1.9
1,421,538	-		Pf1N1B4_1243	0.11	+1.7
1,421,538	-		Pf1N1B4_1243	0.11	-0.9
1,421,739	+		Pf1N1B4_1243	0.24	+1.4
1,421,739	+		Pf1N1B4_1243	0.24	-1.2
1,421,740	-		Pf1N1B4_1243	0.24	+0.7
1,421,740	-		Pf1N1B4_1243	0.24	+0.1
1,421,740	-		Pf1N1B4_1243	0.24	-0.1