Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21250 and HSERO_RS21255 are separated by 371 nucleotides HSERO_RS21255 and HSERO_RS21260 are separated by 277 nucleotides
HSERO_RS21250: HSERO_RS21250 - amino acid ABC transporter ATP-binding protein, at 4,865,213 to 4,865,947
_RS21250
HSERO_RS21255: HSERO_RS21255 - hypothetical protein, at 4,866,319 to 4,866,864
_RS21255
HSERO_RS21260: HSERO_RS21260 - adenosine deaminase, at 4,867,142 to 4,868,200
_RS21260
Position (kb) 4866
4867 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4865.336 kb on - strand, within HSERO_RS21250 at 4865.372 kb on - strand, within HSERO_RS21250 at 4865.671 kb on + strand, within HSERO_RS21250 at 4865.774 kb on + strand, within HSERO_RS21250 at 4865.981 kb on + strand at 4865.989 kb on - strand at 4865.992 kb on - strand at 4865.999 kb on - strand at 4866.016 kb on - strand at 4866.072 kb on - strand at 4866.088 kb on - strand at 4866.097 kb on + strand at 4866.097 kb on + strand at 4866.236 kb on + strand at 4866.339 kb on + strand at 4866.371 kb on - strand at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.374 kb on + strand, within HSERO_RS21255 at 4866.382 kb on - strand, within HSERO_RS21255 at 4866.382 kb on - strand, within HSERO_RS21255 at 4866.582 kb on + strand, within HSERO_RS21255 at 4866.748 kb on - strand, within HSERO_RS21255 at 4866.776 kb on + strand, within HSERO_RS21255 at 4866.977 kb on + strand at 4867.105 kb on + strand at 4867.118 kb on + strand at 4867.207 kb on + strand at 4867.294 kb on + strand, within HSERO_RS21260 at 4867.294 kb on + strand, within HSERO_RS21260 at 4867.302 kb on - strand, within HSERO_RS21260 at 4867.313 kb on + strand, within HSERO_RS21260 at 4867.333 kb on - strand at 4867.371 kb on - strand, within HSERO_RS21260 at 4867.485 kb on + strand, within HSERO_RS21260 at 4867.538 kb on + strand, within HSERO_RS21260 at 4867.590 kb on - strand, within HSERO_RS21260 at 4867.693 kb on - strand, within HSERO_RS21260 at 4867.758 kb on + strand, within HSERO_RS21260 at 4867.824 kb on - strand, within HSERO_RS21260
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 4,865,336 - HSERO_RS21250 0.17 +0.0 4,865,372 - HSERO_RS21250 0.22 +2.1 4,865,671 + HSERO_RS21250 0.62 +0.8 4,865,774 + HSERO_RS21250 0.76 -0.2 4,865,981 + +0.0 4,865,989 - -1.1 4,865,992 - +0.5 4,865,999 - +2.9 4,866,016 - -0.3 4,866,072 - +0.1 4,866,088 - -0.2 4,866,097 + -0.0 4,866,097 + +0.6 4,866,236 + +0.2 4,866,339 + +0.0 4,866,371 - +0.7 4,866,374 + HSERO_RS21255 0.10 -0.7 4,866,374 + HSERO_RS21255 0.10 -0.0 4,866,374 + HSERO_RS21255 0.10 -0.1 4,866,374 + HSERO_RS21255 0.10 -1.7 4,866,374 + HSERO_RS21255 0.10 -0.2 4,866,374 + HSERO_RS21255 0.10 +0.1 4,866,374 + HSERO_RS21255 0.10 +0.8 4,866,374 + HSERO_RS21255 0.10 -0.4 4,866,382 - HSERO_RS21255 0.12 -1.9 4,866,382 - HSERO_RS21255 0.12 +0.8 4,866,582 + HSERO_RS21255 0.48 +0.1 4,866,748 - HSERO_RS21255 0.79 -2.9 4,866,776 + HSERO_RS21255 0.84 +1.1 4,866,977 + +0.5 4,867,105 + -0.9 4,867,118 + -1.3 4,867,207 + -0.6 4,867,294 + HSERO_RS21260 0.14 +0.0 4,867,294 + HSERO_RS21260 0.14 -0.7 4,867,302 - HSERO_RS21260 0.15 -0.2 4,867,313 + HSERO_RS21260 0.16 -0.2 4,867,333 - +1.5 4,867,371 - HSERO_RS21260 0.22 -1.4 4,867,485 + HSERO_RS21260 0.32 -0.4 4,867,538 + HSERO_RS21260 0.37 -0.1 4,867,590 - HSERO_RS21260 0.42 +0.1 4,867,693 - HSERO_RS21260 0.52 +1.3 4,867,758 + HSERO_RS21260 0.58 -0.2 4,867,824 - HSERO_RS21260 0.64 -0.1
Or see this region's nucleotide sequence