Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19940 and HSERO_RS19945 are separated by 50 nucleotides HSERO_RS19945 and HSERO_RS19950 are separated by 9 nucleotides
HSERO_RS19940: HSERO_RS19940 - ABC transporter substrate-binding protein, at 4,577,013 to 4,578,200
_RS19940
HSERO_RS19945: HSERO_RS19945 - vanillate O-demethylase (vanillate degradation ferredoxin-like) oxidoreductase, at 4,578,251 to 4,579,207
_RS19945
HSERO_RS19950: HSERO_RS19950 - Rieske (2Fe-2S) protein, at 4,579,217 to 4,580,266
_RS19950
Position (kb) 4578
4579
4580 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4577.352 kb on + strand, within HSERO_RS19940 at 4577.362 kb on - strand, within HSERO_RS19940 at 4577.441 kb on - strand, within HSERO_RS19940 at 4577.547 kb on - strand, within HSERO_RS19940 at 4577.585 kb on - strand, within HSERO_RS19940 at 4577.598 kb on + strand, within HSERO_RS19940 at 4577.598 kb on + strand, within HSERO_RS19940 at 4577.692 kb on + strand, within HSERO_RS19940 at 4577.747 kb on + strand, within HSERO_RS19940 at 4578.088 kb on - strand at 4578.421 kb on + strand, within HSERO_RS19945 at 4578.474 kb on + strand, within HSERO_RS19945 at 4578.474 kb on + strand, within HSERO_RS19945 at 4578.477 kb on - strand, within HSERO_RS19945 at 4578.482 kb on - strand, within HSERO_RS19945 at 4578.482 kb on - strand, within HSERO_RS19945 at 4578.528 kb on + strand, within HSERO_RS19945 at 4578.536 kb on - strand, within HSERO_RS19945 at 4578.802 kb on - strand, within HSERO_RS19945 at 4578.838 kb on - strand, within HSERO_RS19945 at 4578.855 kb on - strand, within HSERO_RS19945 at 4579.038 kb on + strand at 4579.038 kb on + strand, within HSERO_RS19945 at 4579.215 kb on + strand at 4579.223 kb on - strand at 4579.399 kb on - strand, within HSERO_RS19950 at 4579.789 kb on - strand, within HSERO_RS19950 at 4579.802 kb on + strand, within HSERO_RS19950 at 4579.915 kb on - strand, within HSERO_RS19950
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 4,577,352 + HSERO_RS19940 0.29 +0.0 4,577,362 - HSERO_RS19940 0.29 +5.1 4,577,441 - HSERO_RS19940 0.36 -1.6 4,577,547 - HSERO_RS19940 0.45 +0.8 4,577,585 - HSERO_RS19940 0.48 +0.4 4,577,598 + HSERO_RS19940 0.49 -2.1 4,577,598 + HSERO_RS19940 0.49 -0.1 4,577,692 + HSERO_RS19940 0.57 -1.8 4,577,747 + HSERO_RS19940 0.62 -1.2 4,578,088 - +0.2 4,578,421 + HSERO_RS19945 0.18 -0.4 4,578,474 + HSERO_RS19945 0.23 +0.3 4,578,474 + HSERO_RS19945 0.23 -1.1 4,578,477 - HSERO_RS19945 0.24 -0.3 4,578,482 - HSERO_RS19945 0.24 -1.1 4,578,482 - HSERO_RS19945 0.24 +0.5 4,578,528 + HSERO_RS19945 0.29 +2.0 4,578,536 - HSERO_RS19945 0.30 +0.1 4,578,802 - HSERO_RS19945 0.58 +1.5 4,578,838 - HSERO_RS19945 0.61 -1.0 4,578,855 - HSERO_RS19945 0.63 +0.0 4,579,038 + -0.6 4,579,038 + HSERO_RS19945 0.82 +0.9 4,579,215 + +0.9 4,579,223 - +0.3 4,579,399 - HSERO_RS19950 0.17 +0.1 4,579,789 - HSERO_RS19950 0.54 -0.2 4,579,802 + HSERO_RS19950 0.56 -1.0 4,579,915 - HSERO_RS19950 0.66 +1.7
Or see this region's nucleotide sequence