Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18865 and HSERO_RS18870 are separated by 61 nucleotides HSERO_RS18870 and HSERO_RS18875 are separated by 1 nucleotides HSERO_RS18875 and HSERO_RS18880 are separated by 685 nucleotides
HSERO_RS18865: HSERO_RS18865 - potassium-transporting ATPase subunit B, at 4,327,840 to 4,330,032
_RS18865
HSERO_RS18870: HSERO_RS18870 - ATPase, at 4,330,094 to 4,331,875
_RS18870
HSERO_RS18875: HSERO_RS18875 - ATPase, at 4,331,877 to 4,331,966
_RS18875
HSERO_RS18880: HSERO_RS18880 - diguanylate cyclase, at 4,332,652 to 4,334,868
_RS18880
Position (kb) 4330
4331
4332 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4329.291 kb on + strand, within HSERO_RS18865 at 4329.317 kb on + strand, within HSERO_RS18865 at 4329.365 kb on + strand, within HSERO_RS18865 at 4329.522 kb on + strand, within HSERO_RS18865 at 4329.557 kb on + strand, within HSERO_RS18865 at 4329.557 kb on + strand, within HSERO_RS18865 at 4329.557 kb on + strand, within HSERO_RS18865 at 4329.557 kb on + strand, within HSERO_RS18865 at 4329.565 kb on - strand, within HSERO_RS18865 at 4329.565 kb on - strand, within HSERO_RS18865 at 4329.791 kb on + strand, within HSERO_RS18865 at 4329.899 kb on - strand at 4329.913 kb on + strand at 4329.958 kb on + strand at 4329.989 kb on - strand at 4330.470 kb on - strand, within HSERO_RS18870 at 4330.509 kb on - strand, within HSERO_RS18870 at 4330.517 kb on - strand, within HSERO_RS18870 at 4330.701 kb on + strand, within HSERO_RS18870 at 4330.712 kb on + strand, within HSERO_RS18870 at 4330.886 kb on - strand, within HSERO_RS18870 at 4330.935 kb on + strand, within HSERO_RS18870 at 4331.054 kb on - strand, within HSERO_RS18870 at 4331.054 kb on - strand, within HSERO_RS18870 at 4331.143 kb on - strand, within HSERO_RS18870 at 4331.190 kb on + strand, within HSERO_RS18870 at 4331.203 kb on + strand, within HSERO_RS18870 at 4331.203 kb on + strand, within HSERO_RS18870 at 4331.203 kb on + strand, within HSERO_RS18870 at 4331.211 kb on - strand, within HSERO_RS18870 at 4331.250 kb on - strand, within HSERO_RS18870 at 4331.364 kb on + strand, within HSERO_RS18870 at 4331.518 kb on - strand, within HSERO_RS18870 at 4331.577 kb on + strand, within HSERO_RS18870 at 4331.672 kb on + strand, within HSERO_RS18870 at 4331.847 kb on - strand at 4331.862 kb on - strand at 4331.898 kb on - strand, within HSERO_RS18875 at 4332.041 kb on + strand at 4332.115 kb on - strand at 4332.242 kb on + strand at 4332.289 kb on - strand at 4332.546 kb on - strand at 4332.620 kb on - strand at 4332.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 4,329,291 + HSERO_RS18865 0.66 +1.0 4,329,317 + HSERO_RS18865 0.67 +0.8 4,329,365 + HSERO_RS18865 0.70 -0.1 4,329,522 + HSERO_RS18865 0.77 -1.0 4,329,557 + HSERO_RS18865 0.78 -0.8 4,329,557 + HSERO_RS18865 0.78 -0.6 4,329,557 + HSERO_RS18865 0.78 +0.2 4,329,557 + HSERO_RS18865 0.78 +0.8 4,329,565 - HSERO_RS18865 0.79 +0.5 4,329,565 - HSERO_RS18865 0.79 +0.0 4,329,791 + HSERO_RS18865 0.89 -0.5 4,329,899 - +1.4 4,329,913 + -0.4 4,329,958 + -0.7 4,329,989 - -1.7 4,330,470 - HSERO_RS18870 0.21 -0.2 4,330,509 - HSERO_RS18870 0.23 -0.8 4,330,517 - HSERO_RS18870 0.24 -0.9 4,330,701 + HSERO_RS18870 0.34 -1.9 4,330,712 + HSERO_RS18870 0.35 +0.7 4,330,886 - HSERO_RS18870 0.44 -0.3 4,330,935 + HSERO_RS18870 0.47 -0.7 4,331,054 - HSERO_RS18870 0.54 -1.6 4,331,054 - HSERO_RS18870 0.54 -1.0 4,331,143 - HSERO_RS18870 0.59 +0.3 4,331,190 + HSERO_RS18870 0.62 -0.4 4,331,203 + HSERO_RS18870 0.62 -0.7 4,331,203 + HSERO_RS18870 0.62 +0.1 4,331,203 + HSERO_RS18870 0.62 +0.4 4,331,211 - HSERO_RS18870 0.63 +0.6 4,331,250 - HSERO_RS18870 0.65 +1.8 4,331,364 + HSERO_RS18870 0.71 +2.0 4,331,518 - HSERO_RS18870 0.80 -0.5 4,331,577 + HSERO_RS18870 0.83 -2.1 4,331,672 + HSERO_RS18870 0.89 +0.2 4,331,847 - +0.8 4,331,862 - -0.4 4,331,898 - HSERO_RS18875 0.23 -0.7 4,332,041 + -0.5 4,332,115 - -0.4 4,332,242 + -1.6 4,332,289 - +0.4 4,332,546 - +0.5 4,332,620 - +0.4 4,332,804 - +0.6
Or see this region's nucleotide sequence