Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18820 and HSERO_RS18825 are separated by 8 nucleotides HSERO_RS18825 and HSERO_RS18830 are separated by 270 nucleotides
HSERO_RS18820: HSERO_RS18820 - LysR family transcriptional regulator, at 4,317,025 to 4,317,930
_RS18820
HSERO_RS18825: HSERO_RS18825 - membrane protein, at 4,317,939 to 4,318,913
_RS18825
HSERO_RS18830: HSERO_RS18830 - membrane protein, at 4,319,184 to 4,320,782
_RS18830
Position (kb) 4317
4318
4319 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4316.967 kb on + strand at 4316.975 kb on - strand at 4316.975 kb on - strand at 4316.975 kb on - strand at 4317.007 kb on + strand at 4317.120 kb on + strand, within HSERO_RS18820 at 4317.182 kb on + strand, within HSERO_RS18820 at 4317.389 kb on + strand, within HSERO_RS18820 at 4317.461 kb on - strand, within HSERO_RS18820 at 4317.840 kb on - strand at 4317.945 kb on - strand at 4317.995 kb on + strand at 4318.103 kb on + strand, within HSERO_RS18825 at 4318.133 kb on - strand, within HSERO_RS18825 at 4318.133 kb on - strand, within HSERO_RS18825 at 4318.193 kb on + strand, within HSERO_RS18825 at 4318.238 kb on + strand, within HSERO_RS18825 at 4318.268 kb on - strand, within HSERO_RS18825 at 4318.310 kb on - strand, within HSERO_RS18825 at 4318.332 kb on - strand, within HSERO_RS18825 at 4318.619 kb on + strand, within HSERO_RS18825 at 4318.627 kb on - strand, within HSERO_RS18825 at 4318.769 kb on + strand, within HSERO_RS18825 at 4318.920 kb on + strand at 4318.937 kb on - strand at 4319.058 kb on - strand at 4319.175 kb on + strand at 4319.214 kb on + strand at 4319.275 kb on + strand at 4319.326 kb on + strand at 4319.393 kb on + strand, within HSERO_RS18830 at 4319.582 kb on + strand, within HSERO_RS18830 at 4319.605 kb on - strand, within HSERO_RS18830
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 4,316,967 + -1.2 4,316,975 - +0.1 4,316,975 - -1.2 4,316,975 - -0.3 4,317,007 + -0.9 4,317,120 + HSERO_RS18820 0.10 -0.2 4,317,182 + HSERO_RS18820 0.17 -0.3 4,317,389 + HSERO_RS18820 0.40 -0.2 4,317,461 - HSERO_RS18820 0.48 -0.7 4,317,840 - -1.7 4,317,945 - -1.0 4,317,995 + -1.4 4,318,103 + HSERO_RS18825 0.17 +0.1 4,318,133 - HSERO_RS18825 0.20 +0.3 4,318,133 - HSERO_RS18825 0.20 -0.3 4,318,193 + HSERO_RS18825 0.26 -1.3 4,318,238 + HSERO_RS18825 0.31 +3.9 4,318,268 - HSERO_RS18825 0.34 +1.3 4,318,310 - HSERO_RS18825 0.38 -0.2 4,318,332 - HSERO_RS18825 0.40 -0.3 4,318,619 + HSERO_RS18825 0.70 +0.1 4,318,627 - HSERO_RS18825 0.71 +1.2 4,318,769 + HSERO_RS18825 0.85 -0.1 4,318,920 + +0.3 4,318,937 - -0.6 4,319,058 - -1.0 4,319,175 + -0.8 4,319,214 + -0.1 4,319,275 + +0.2 4,319,326 + +0.2 4,319,393 + HSERO_RS18830 0.13 +0.4 4,319,582 + HSERO_RS18830 0.25 -0.3 4,319,605 - HSERO_RS18830 0.26 +0.3
Or see this region's nucleotide sequence