Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18560 and HSERO_RS18565 are separated by 118 nucleotides HSERO_RS18565 and HSERO_RS18570 are separated by 304 nucleotides
HSERO_RS18560: HSERO_RS18560 - hypothetical protein, at 4,257,011 to 4,257,769
_RS18560
HSERO_RS18565: HSERO_RS18565 - chemotaxis protein, at 4,257,888 to 4,259,525
_RS18565
HSERO_RS18570: HSERO_RS18570 - maleylacetate reductase, at 4,259,830 to 4,260,900
_RS18570
Position (kb) 4257
4258
4259
4260 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4257.105 kb on - strand, within HSERO_RS18560 at 4257.318 kb on - strand, within HSERO_RS18560 at 4257.396 kb on + strand, within HSERO_RS18560 at 4257.545 kb on + strand, within HSERO_RS18560 at 4257.651 kb on - strand, within HSERO_RS18560 at 4257.728 kb on - strand at 4257.733 kb on - strand at 4257.782 kb on + strand at 4258.229 kb on - strand, within HSERO_RS18565 at 4258.486 kb on + strand, within HSERO_RS18565 at 4258.499 kb on + strand, within HSERO_RS18565 at 4258.629 kb on - strand, within HSERO_RS18565 at 4258.793 kb on - strand, within HSERO_RS18565 at 4259.010 kb on - strand, within HSERO_RS18565 at 4259.231 kb on + strand, within HSERO_RS18565 at 4259.244 kb on - strand, within HSERO_RS18565 at 4259.246 kb on + strand, within HSERO_RS18565 at 4259.318 kb on + strand, within HSERO_RS18565 at 4259.508 kb on - strand at 4259.521 kb on + strand at 4259.528 kb on - strand at 4259.667 kb on - strand at 4259.801 kb on + strand at 4259.817 kb on + strand at 4259.817 kb on + strand at 4259.823 kb on + strand at 4259.825 kb on - strand at 4259.974 kb on + strand, within HSERO_RS18570 at 4259.977 kb on - strand, within HSERO_RS18570 at 4260.023 kb on - strand, within HSERO_RS18570 at 4260.103 kb on - strand, within HSERO_RS18570 at 4260.106 kb on - strand, within HSERO_RS18570 at 4260.120 kb on + strand, within HSERO_RS18570 at 4260.168 kb on + strand, within HSERO_RS18570 at 4260.168 kb on + strand, within HSERO_RS18570 at 4260.176 kb on - strand, within HSERO_RS18570 at 4260.208 kb on + strand, within HSERO_RS18570 at 4260.208 kb on + strand, within HSERO_RS18570 at 4260.296 kb on + strand, within HSERO_RS18570 at 4260.389 kb on - strand, within HSERO_RS18570 at 4260.426 kb on + strand, within HSERO_RS18570 at 4260.441 kb on - strand, within HSERO_RS18570 at 4260.507 kb on + strand, within HSERO_RS18570 at 4260.521 kb on - strand, within HSERO_RS18570
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 4,257,105 - HSERO_RS18560 0.12 +1.6 4,257,318 - HSERO_RS18560 0.40 +0.8 4,257,396 + HSERO_RS18560 0.51 +2.0 4,257,545 + HSERO_RS18560 0.70 +0.5 4,257,651 - HSERO_RS18560 0.84 +1.0 4,257,728 - +0.4 4,257,733 - +0.1 4,257,782 + +1.3 4,258,229 - HSERO_RS18565 0.21 +0.1 4,258,486 + HSERO_RS18565 0.37 -2.1 4,258,499 + HSERO_RS18565 0.37 -0.1 4,258,629 - HSERO_RS18565 0.45 -2.3 4,258,793 - HSERO_RS18565 0.55 -0.2 4,259,010 - HSERO_RS18565 0.68 -1.7 4,259,231 + HSERO_RS18565 0.82 +0.6 4,259,244 - HSERO_RS18565 0.83 -0.1 4,259,246 + HSERO_RS18565 0.83 -0.2 4,259,318 + HSERO_RS18565 0.87 -0.3 4,259,508 - -0.8 4,259,521 + +0.0 4,259,528 - -0.0 4,259,667 - -0.0 4,259,801 + -2.9 4,259,817 + -0.0 4,259,817 + +1.0 4,259,823 + -1.0 4,259,825 - -2.5 4,259,974 + HSERO_RS18570 0.13 +0.1 4,259,977 - HSERO_RS18570 0.14 -0.6 4,260,023 - HSERO_RS18570 0.18 +0.2 4,260,103 - HSERO_RS18570 0.25 -0.2 4,260,106 - HSERO_RS18570 0.26 +0.3 4,260,120 + HSERO_RS18570 0.27 +0.4 4,260,168 + HSERO_RS18570 0.32 +0.1 4,260,168 + HSERO_RS18570 0.32 -0.1 4,260,176 - HSERO_RS18570 0.32 +0.2 4,260,208 + HSERO_RS18570 0.35 -1.0 4,260,208 + HSERO_RS18570 0.35 -0.6 4,260,296 + HSERO_RS18570 0.44 +0.3 4,260,389 - HSERO_RS18570 0.52 +0.5 4,260,426 + HSERO_RS18570 0.56 -1.0 4,260,441 - HSERO_RS18570 0.57 -0.4 4,260,507 + HSERO_RS18570 0.63 +0.0 4,260,521 - HSERO_RS18570 0.65 +1.0
Or see this region's nucleotide sequence