Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS14305 and HSERO_RS14310 are separated by 79 nucleotides HSERO_RS14310 and HSERO_RS14315 are separated by 9 nucleotides HSERO_RS14315 and HSERO_RS14320 overlap by 4 nucleotides HSERO_RS14320 and HSERO_RS14325 are separated by 4 nucleotides
HSERO_RS14305: HSERO_RS14305 - chemotaxis protein CheY, at 3,247,715 to 3,248,146
_RS14305
HSERO_RS14310: HSERO_RS14310 - globin, at 3,248,226 to 3,248,603
_RS14310
HSERO_RS14315: HSERO_RS14315 - hypothetical protein, at 3,248,613 to 3,249,200
_RS14315
HSERO_RS14320: HSERO_RS14320 - FmdB family transcriptional regulator, at 3,249,197 to 3,249,520
_RS14320
HSERO_RS14325: HSERO_RS14325 - hypothetical protein, at 3,249,525 to 3,250,376
_RS14325
Position (kb) 3248
3249
3250 Strain fitness (log2 ratio) -1
0
1 at 3247.659 kb on + strand at 3247.868 kb on + strand, within HSERO_RS14305 at 3247.906 kb on + strand, within HSERO_RS14305 at 3248.111 kb on + strand at 3248.183 kb on + strand at 3248.188 kb on + strand at 3248.193 kb on + strand at 3248.632 kb on - strand at 3248.893 kb on - strand, within HSERO_RS14315 at 3248.910 kb on + strand, within HSERO_RS14315 at 3248.988 kb on - strand, within HSERO_RS14315 at 3249.240 kb on + strand, within HSERO_RS14320 at 3249.309 kb on - strand, within HSERO_RS14320 at 3249.906 kb on + strand, within HSERO_RS14325 at 3249.968 kb on + strand, within HSERO_RS14325 at 3249.983 kb on - strand, within HSERO_RS14325
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 3,247,659 + -0.0 3,247,868 + HSERO_RS14305 0.35 +0.3 3,247,906 + HSERO_RS14305 0.44 -0.6 3,248,111 + +1.7 3,248,183 + -0.4 3,248,188 + -1.0 3,248,193 + -0.9 3,248,632 - -1.0 3,248,893 - HSERO_RS14315 0.48 +1.1 3,248,910 + HSERO_RS14315 0.51 +0.7 3,248,988 - HSERO_RS14315 0.64 +0.9 3,249,240 + HSERO_RS14320 0.13 +0.2 3,249,309 - HSERO_RS14320 0.35 +0.8 3,249,906 + HSERO_RS14325 0.45 -1.0 3,249,968 + HSERO_RS14325 0.52 +0.2 3,249,983 - HSERO_RS14325 0.54 -0.4
Or see this region's nucleotide sequence