Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05005

Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
1,101,219	+				+0.2
1,101,226	+				-0.2
1,101,226	+				+0.9
1,101,230	+				-1.6
1,101,238	-				-0.5
1,101,239	-				+2.2
1,101,239	-				+0.2
1,101,242	+				-0.5
1,101,242	+				-0.2
1,101,244	+				+0.2
1,101,244	+				+0.7
1,101,244	+				+0.4
1,101,244	+				+1.2
1,101,244	+				-0.4
1,101,244	+				+1.4
1,101,244	+				+0.6
1,101,244	+				-0.4
1,101,244	+				+0.9
1,101,244	+				-0.8
1,101,244	+				-0.6
1,101,244	+				-0.1
1,101,244	+				+0.7
1,101,244	+				-0.3
1,101,244	+				-1.4
1,101,244	+				-0.5
1,101,244	+				-0.1
1,101,244	+				-0.9
1,101,244	+				+2.0
1,101,244	+				+0.2
1,101,244	+				+0.2
1,101,244	+				-0.8
1,101,244	+				-0.1
1,101,244	+				-0.6
1,101,244	+				+0.9
1,101,244	+				-0.1
1,101,244	+				-0.7
1,101,244	+				-0.7
1,101,244	+				-0.4
1,101,249	+				+0.1
1,101,252	-				-0.4
1,101,252	-				+0.7
1,101,252	-				+0.4
1,101,252	-				+1.4
1,101,252	-				-1.3
1,101,252	-				+0.1
1,101,252	-				-0.5
1,101,252	-				-0.5
1,101,252	-				+0.2
1,101,252	-				+0.4
1,101,252	-				-0.2
1,101,252	-				+0.0
1,101,252	-				+0.9
1,101,252	-				-0.2
1,101,252	-				-2.2
1,101,252	-				+0.8
1,101,252	-				+0.5
1,101,252	-				-0.3
1,101,252	-				-0.6
1,101,252	-				+1.4
1,101,252	-				+0.4
1,101,252	-				-0.3
1,101,252	-				-0.4
1,101,252	-				+0.6
1,101,252	-				+0.0
1,101,253	-				-0.3
1,101,253	-				+1.4
1,101,301	+				+0.9
1,101,301	+				-0.1
1,101,309	-				+0.3
1,101,309	-				-1.0
1,101,309	-				+0.6
1,101,318	-				+1.7
1,101,334	-				-0.6
1,101,340	+				+1.2
1,101,340	+				-0.2
1,101,347	+				-0.1
1,101,347	+				+1.5
1,101,350	-				+1.4
1,101,355	-				-0.3
1,101,355	-				-1.2
1,101,355	-				+0.2
1,101,376	-				+0.1
1,101,404	-				+0.8
1,101,426	-				-0.9
1,101,467	-		HSERO_RS05000	0.14	+2.0
1,101,484	-		HSERO_RS05000	0.17	-2.6
1,101,484	-		HSERO_RS05000	0.17	+0.8
1,101,504	-		HSERO_RS05000	0.19	+0.2
1,101,545	+		HSERO_RS05000	0.24	+0.1
1,101,563	-		HSERO_RS05000	0.27	-0.6
1,101,572	-		HSERO_RS05000	0.28	-0.8
1,101,582	-		HSERO_RS05000	0.29	+0.4
1,101,621	+		HSERO_RS05000	0.34	+0.5
1,101,667	-		HSERO_RS05000	0.40	+0.3
1,101,678	+		HSERO_RS05000	0.41	+1.6
1,101,679	-		HSERO_RS05000	0.41	-0.6
1,101,747	-		HSERO_RS05000	0.50	-0.2
1,101,971	+		HSERO_RS05000	0.78	+2.1
1,101,979	-		HSERO_RS05000	0.79	+0.3
1,102,017	+		HSERO_RS05000	0.84	+1.0
1,102,049	-		HSERO_RS05000	0.88	+0.9
1,102,049	-		HSERO_RS05000	0.88	+0.4
1,102,080	+				+0.3
1,102,099	+				+1.4
1,102,122	+				+0.3
1,102,122	+				-1.2
1,102,148	+				-2.9
1,102,264	-				+0.3
1,102,276	+				+1.1
1,102,276	+				+0.4
1,102,285	+				-0.1
1,102,302	+		HSERO_RS05005	0.10	+1.2
1,102,400	-		HSERO_RS05005	0.20	-0.3
1,102,447	-		HSERO_RS05005	0.25	-0.4
1,102,503	+		HSERO_RS05005	0.31	-0.7
1,102,526	+		HSERO_RS05005	0.33	-0.5
1,102,533	+		HSERO_RS05005	0.34	-0.1
1,102,613	+		HSERO_RS05005	0.42	-1.4
1,102,700	+				-0.6
1,102,744	-		HSERO_RS05005	0.55	+0.0
1,102,784	+		HSERO_RS05005	0.59	-0.3
1,102,797	-		HSERO_RS05005	0.61	-2.7
1,102,900	-		HSERO_RS05005	0.71	+0.5
1,102,900	-		HSERO_RS05005	0.71	-1.1
1,102,982	-		HSERO_RS05005	0.80	+1.1
1,103,022	+		HSERO_RS05005	0.84	-0.7
1,103,067	-		HSERO_RS05005	0.88	-2.4
1,103,074	+		HSERO_RS05005	0.89	+1.1
1,103,165	+				+0.4
1,103,183	-				+1.9
1,103,266	-				+0.2
1,103,315	+				+1.3
1,103,396	+				+1.7
1,103,404	-				+0.5
1,103,455	-				-0.3
1,103,536	+				+0.3
1,103,536	+				+3.0
1,103,563	+				+0.4
1,103,563	+				-0.2
1,103,571	-				+0.0
1,103,571	-				-0.7
1,103,571	-				-0.1
1,103,571	-				+1.4
1,103,620	+				+2.3
1,103,653	-				-0.7
1,103,711	+				+0.2
1,103,719	-				+1.3
1,103,826	+		HSERO_RS05010	0.10	+0.3
1,103,984	+		HSERO_RS05010	0.14	+0.9
1,104,018	-		HSERO_RS05010	0.14	-2.0