Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04190 and HSERO_RS04195 are separated by 117 nucleotides HSERO_RS04195 and HSERO_RS04200 are separated by 447 nucleotides
HSERO_RS04190: HSERO_RS04190 - DNA mismatch repair protein, at 916,548 to 918,473
_RS04190
HSERO_RS04195: HSERO_RS04195 - methyl-accepting chemotaxis protein, at 918,591 to 920,564
_RS04195
HSERO_RS04200: HSERO_RS04200 - diguanylate cyclase, at 921,012 to 923,954
_RS04200
Position (kb) 918
919
920
921 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 917.671 kb on + strand, within HSERO_RS04190 at 917.929 kb on - strand, within HSERO_RS04190 at 917.934 kb on - strand, within HSERO_RS04190 at 917.934 kb on - strand at 918.092 kb on - strand, within HSERO_RS04190 at 918.273 kb on + strand, within HSERO_RS04190 at 918.302 kb on - strand at 918.342 kb on - strand at 918.478 kb on + strand at 918.478 kb on + strand at 918.614 kb on - strand at 918.685 kb on - strand at 919.118 kb on + strand, within HSERO_RS04195 at 919.150 kb on + strand, within HSERO_RS04195 at 919.180 kb on - strand, within HSERO_RS04195 at 919.214 kb on - strand, within HSERO_RS04195 at 919.274 kb on + strand, within HSERO_RS04195 at 919.339 kb on + strand, within HSERO_RS04195 at 919.392 kb on - strand, within HSERO_RS04195 at 919.403 kb on + strand, within HSERO_RS04195 at 919.411 kb on - strand, within HSERO_RS04195 at 919.884 kb on - strand, within HSERO_RS04195 at 919.885 kb on - strand, within HSERO_RS04195 at 920.286 kb on - strand, within HSERO_RS04195 at 920.329 kb on + strand, within HSERO_RS04195 at 920.357 kb on - strand at 920.407 kb on - strand at 920.535 kb on + strand at 920.536 kb on - strand at 920.630 kb on - strand at 920.753 kb on - strand at 920.907 kb on + strand at 920.917 kb on + strand at 921.053 kb on - strand at 921.077 kb on + strand at 921.180 kb on + strand at 921.201 kb on + strand at 921.209 kb on - strand at 921.278 kb on - strand at 921.485 kb on + strand, within HSERO_RS04200 at 921.536 kb on + strand, within HSERO_RS04200
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 917,671 + HSERO_RS04190 0.58 -2.1 917,929 - HSERO_RS04190 0.72 -0.6 917,934 - HSERO_RS04190 0.72 -0.3 917,934 - -1.7 918,092 - HSERO_RS04190 0.80 +0.2 918,273 + HSERO_RS04190 0.90 -1.9 918,302 - -0.9 918,342 - -0.9 918,478 + +0.2 918,478 + +0.8 918,614 - -0.1 918,685 - +1.0 919,118 + HSERO_RS04195 0.27 +1.6 919,150 + HSERO_RS04195 0.28 -1.0 919,180 - HSERO_RS04195 0.30 +0.6 919,214 - HSERO_RS04195 0.32 -0.4 919,274 + HSERO_RS04195 0.35 -0.5 919,339 + HSERO_RS04195 0.38 +1.1 919,392 - HSERO_RS04195 0.41 -1.4 919,403 + HSERO_RS04195 0.41 +1.2 919,411 - HSERO_RS04195 0.42 +0.9 919,884 - HSERO_RS04195 0.66 +2.8 919,885 - HSERO_RS04195 0.66 -0.8 920,286 - HSERO_RS04195 0.86 +0.1 920,329 + HSERO_RS04195 0.88 -1.4 920,357 - +6.0 920,407 - -0.5 920,535 + -1.7 920,536 - -0.7 920,630 - +0.4 920,753 - -0.6 920,907 + +0.1 920,917 + -0.3 921,053 - -0.3 921,077 + -1.7 921,180 + -2.3 921,201 + -1.2 921,209 - -1.1 921,278 - +0.2 921,485 + HSERO_RS04200 0.16 +0.2 921,536 + HSERO_RS04200 0.18 +0.4
Or see this region's nucleotide sequence