Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03780 and HSERO_RS03785 overlap by 4 nucleotides HSERO_RS03785 and HSERO_RS03790 are separated by 30 nucleotides
HSERO_RS03780: HSERO_RS03780 - type VI secretion protein, at 832,436 to 833,422
_RS03780
HSERO_RS03785: HSERO_RS03785 - type VI secretion protein VasK, at 833,419 to 837,294
_RS03785
HSERO_RS03790: HSERO_RS03790 - hypothetical protein, at 837,325 to 838,851
_RS03790
Position (kb) 833
834
835
836
837
838 Strain fitness (log2 ratio) -2
-1
0
1
2 at 832.441 kb on - strand at 832.445 kb on + strand at 832.517 kb on + strand at 832.598 kb on - strand, within HSERO_RS03780 at 832.598 kb on - strand, within HSERO_RS03780 at 832.659 kb on - strand at 832.717 kb on + strand, within HSERO_RS03780 at 832.854 kb on - strand, within HSERO_RS03780 at 833.663 kb on - strand at 833.690 kb on + strand at 833.723 kb on + strand at 833.792 kb on - strand at 833.806 kb on + strand at 833.903 kb on - strand, within HSERO_RS03785 at 833.923 kb on + strand, within HSERO_RS03785 at 833.931 kb on - strand, within HSERO_RS03785 at 834.057 kb on + strand at 834.065 kb on - strand, within HSERO_RS03785 at 834.303 kb on + strand, within HSERO_RS03785 at 834.423 kb on + strand, within HSERO_RS03785 at 834.508 kb on - strand, within HSERO_RS03785 at 834.614 kb on + strand, within HSERO_RS03785 at 834.674 kb on - strand, within HSERO_RS03785 at 834.829 kb on + strand, within HSERO_RS03785 at 835.520 kb on - strand, within HSERO_RS03785 at 835.636 kb on - strand, within HSERO_RS03785 at 835.775 kb on + strand, within HSERO_RS03785 at 835.870 kb on - strand, within HSERO_RS03785 at 835.999 kb on + strand, within HSERO_RS03785 at 836.115 kb on + strand, within HSERO_RS03785 at 836.403 kb on - strand, within HSERO_RS03785 at 836.431 kb on + strand, within HSERO_RS03785 at 836.695 kb on - strand, within HSERO_RS03785 at 836.918 kb on - strand at 836.923 kb on - strand at 837.181 kb on + strand at 837.192 kb on + strand at 837.200 kb on - strand at 837.200 kb on - strand at 837.217 kb on + strand at 837.456 kb on + strand at 837.888 kb on + strand, within HSERO_RS03790 at 837.973 kb on + strand, within HSERO_RS03790
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 832,441 - +0.1 832,445 + -2.4 832,517 + -1.6 832,598 - HSERO_RS03780 0.16 +0.0 832,598 - HSERO_RS03780 0.16 -0.5 832,659 - -1.6 832,717 + HSERO_RS03780 0.28 -1.2 832,854 - HSERO_RS03780 0.42 -1.1 833,663 - -0.3 833,690 + -0.2 833,723 + +0.4 833,792 - +0.2 833,806 + +1.2 833,903 - HSERO_RS03785 0.12 -0.3 833,923 + HSERO_RS03785 0.13 +0.6 833,931 - HSERO_RS03785 0.13 +0.3 834,057 + +1.4 834,065 - HSERO_RS03785 0.17 -0.1 834,303 + HSERO_RS03785 0.23 +0.3 834,423 + HSERO_RS03785 0.26 +1.0 834,508 - HSERO_RS03785 0.28 +1.1 834,614 + HSERO_RS03785 0.31 +1.3 834,674 - HSERO_RS03785 0.32 +1.1 834,829 + HSERO_RS03785 0.36 +0.7 835,520 - HSERO_RS03785 0.54 +1.2 835,636 - HSERO_RS03785 0.57 +1.0 835,775 + HSERO_RS03785 0.61 -0.6 835,870 - HSERO_RS03785 0.63 +0.8 835,999 + HSERO_RS03785 0.67 +0.6 836,115 + HSERO_RS03785 0.70 +0.3 836,403 - HSERO_RS03785 0.77 +0.4 836,431 + HSERO_RS03785 0.78 +0.8 836,695 - HSERO_RS03785 0.85 +0.0 836,918 - -0.9 836,923 - +1.0 837,181 + -0.5 837,192 + +0.0 837,200 - -0.6 837,200 - +1.7 837,217 + +1.6 837,456 + +0.1 837,888 + HSERO_RS03790 0.37 -0.3 837,973 + HSERO_RS03790 0.42 +2.2
Or see this region's nucleotide sequence