Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00265 and HSERO_RS00270 are separated by 345 nucleotides HSERO_RS00270 and HSERO_RS00275 are separated by 126 nucleotides HSERO_RS00275 and HSERO_RS00280 are separated by 18 nucleotides HSERO_RS00280 and HSERO_RS00285 are separated by 8 nucleotides
HSERO_RS00265: HSERO_RS00265 - threonine dehydratase, at 66,473 to 67,678
_RS00265
HSERO_RS00270: HSERO_RS00270 - hypothetical protein, at 68,024 to 68,380
_RS00270
HSERO_RS00275: HSERO_RS00275 - methylated-DNA--protein-cysteine methyltransferase, at 68,507 to 69,079
_RS00275
HSERO_RS00280: HSERO_RS00280 - ABC transporter permease, at 69,098 to 69,964
_RS00280
HSERO_RS00285: HSERO_RS00285 - sulfonate ABC transporter ATP-binding lipoprotein, at 69,973 to 70,845
_RS00285
Position (kb) 68
69
70 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 67.525 kb on + strand, within HSERO_RS00265 at 67.541 kb on + strand, within HSERO_RS00265 at 67.584 kb on + strand at 67.584 kb on + strand at 67.584 kb on + strand at 67.643 kb on + strand at 67.833 kb on - strand at 67.878 kb on - strand at 67.969 kb on + strand at 68.034 kb on + strand at 68.146 kb on + strand, within HSERO_RS00270 at 68.229 kb on - strand, within HSERO_RS00270 at 68.533 kb on - strand at 68.632 kb on + strand, within HSERO_RS00275 at 68.647 kb on - strand, within HSERO_RS00275 at 68.717 kb on - strand, within HSERO_RS00275 at 68.755 kb on + strand, within HSERO_RS00275 at 68.789 kb on - strand, within HSERO_RS00275 at 68.855 kb on - strand, within HSERO_RS00275 at 68.993 kb on - strand, within HSERO_RS00275 at 69.294 kb on - strand, within HSERO_RS00280 at 69.294 kb on - strand, within HSERO_RS00280 at 69.337 kb on - strand, within HSERO_RS00280 at 69.402 kb on + strand, within HSERO_RS00280 at 69.512 kb on + strand, within HSERO_RS00280 at 69.517 kb on + strand, within HSERO_RS00280 at 69.525 kb on - strand, within HSERO_RS00280 at 69.528 kb on + strand, within HSERO_RS00280 at 69.536 kb on - strand, within HSERO_RS00280 at 69.553 kb on - strand, within HSERO_RS00280 at 69.680 kb on - strand, within HSERO_RS00280 at 69.807 kb on + strand, within HSERO_RS00280
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 67,525 + HSERO_RS00265 0.87 -0.3 67,541 + HSERO_RS00265 0.89 +0.6 67,584 + +0.7 67,584 + +0.6 67,584 + +0.3 67,643 + -0.4 67,833 - -0.2 67,878 - -1.1 67,969 + -0.1 68,034 + -0.3 68,146 + HSERO_RS00270 0.34 +0.5 68,229 - HSERO_RS00270 0.57 +0.2 68,533 - +0.3 68,632 + HSERO_RS00275 0.22 +0.8 68,647 - HSERO_RS00275 0.24 +0.3 68,717 - HSERO_RS00275 0.37 +0.2 68,755 + HSERO_RS00275 0.43 +1.1 68,789 - HSERO_RS00275 0.49 +0.7 68,855 - HSERO_RS00275 0.61 +1.5 68,993 - HSERO_RS00275 0.85 +0.1 69,294 - HSERO_RS00280 0.23 +3.6 69,294 - HSERO_RS00280 0.23 -0.7 69,337 - HSERO_RS00280 0.28 +0.8 69,402 + HSERO_RS00280 0.35 -0.8 69,512 + HSERO_RS00280 0.48 +1.1 69,517 + HSERO_RS00280 0.48 +1.5 69,525 - HSERO_RS00280 0.49 -1.0 69,528 + HSERO_RS00280 0.50 -0.2 69,536 - HSERO_RS00280 0.51 -0.5 69,553 - HSERO_RS00280 0.52 -1.4 69,680 - HSERO_RS00280 0.67 -2.6 69,807 + HSERO_RS00280 0.82 -0.1
Or see this region's nucleotide sequence