Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00040 and HSERO_RS00045 are separated by 107 nucleotides HSERO_RS00045 and HSERO_RS00050 are separated by 203 nucleotides
HSERO_RS00040: HSERO_RS00040 - hypothetical protein, at 14,022 to 14,987
_RS00040
HSERO_RS00045: HSERO_RS00045 - hypothetical protein, at 15,095 to 16,108
_RS00045
HSERO_RS00050: HSERO_RS00050 - membrane protein, at 16,312 to 17,625
_RS00050
Position (kb) 15
16
17 Strain fitness (log2 ratio) -2
-1
0
1
2 at 14.102 kb on - strand at 14.126 kb on - strand, within HSERO_RS00040 at 14.278 kb on + strand, within HSERO_RS00040 at 14.342 kb on + strand, within HSERO_RS00040 at 14.342 kb on + strand, within HSERO_RS00040 at 14.640 kb on - strand, within HSERO_RS00040 at 14.736 kb on + strand, within HSERO_RS00040 at 14.783 kb on + strand, within HSERO_RS00040 at 14.791 kb on - strand, within HSERO_RS00040 at 14.879 kb on + strand, within HSERO_RS00040 at 14.928 kb on - strand at 15.052 kb on - strand at 15.059 kb on - strand at 15.062 kb on - strand at 15.119 kb on - strand at 15.160 kb on - strand at 15.253 kb on - strand, within HSERO_RS00045 at 15.333 kb on + strand, within HSERO_RS00045 at 15.413 kb on + strand, within HSERO_RS00045 at 15.421 kb on - strand, within HSERO_RS00045 at 15.421 kb on - strand, within HSERO_RS00045 at 15.718 kb on - strand, within HSERO_RS00045 at 15.851 kb on + strand, within HSERO_RS00045 at 15.962 kb on - strand, within HSERO_RS00045 at 15.971 kb on - strand, within HSERO_RS00045 at 15.994 kb on + strand, within HSERO_RS00045 at 16.276 kb on + strand at 16.390 kb on - strand at 16.519 kb on - strand, within HSERO_RS00050 at 16.543 kb on + strand, within HSERO_RS00050 at 16.580 kb on + strand at 16.639 kb on + strand, within HSERO_RS00050 at 16.669 kb on + strand, within HSERO_RS00050 at 16.720 kb on - strand, within HSERO_RS00050 at 16.822 kb on - strand, within HSERO_RS00050 at 16.843 kb on + strand, within HSERO_RS00050 at 16.843 kb on + strand, within HSERO_RS00050 at 16.885 kb on - strand, within HSERO_RS00050 at 16.914 kb on - strand, within HSERO_RS00050 at 16.962 kb on + strand, within HSERO_RS00050 at 16.962 kb on + strand, within HSERO_RS00050 at 17.048 kb on + strand, within HSERO_RS00050
Per-strain Table
Position Strand Gene LocusTag Fraction Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB remove 14,102 - -0.2 14,126 - HSERO_RS00040 0.11 +0.1 14,278 + HSERO_RS00040 0.27 -1.3 14,342 + HSERO_RS00040 0.33 +1.3 14,342 + HSERO_RS00040 0.33 -0.9 14,640 - HSERO_RS00040 0.64 -0.6 14,736 + HSERO_RS00040 0.74 -1.1 14,783 + HSERO_RS00040 0.79 -2.1 14,791 - HSERO_RS00040 0.80 -0.1 14,879 + HSERO_RS00040 0.89 -0.1 14,928 - -0.5 15,052 - +0.3 15,059 - +0.1 15,062 - -0.6 15,119 - -0.4 15,160 - -2.7 15,253 - HSERO_RS00045 0.16 -0.4 15,333 + HSERO_RS00045 0.23 +0.5 15,413 + HSERO_RS00045 0.31 -1.6 15,421 - HSERO_RS00045 0.32 -0.1 15,421 - HSERO_RS00045 0.32 +0.4 15,718 - HSERO_RS00045 0.61 -0.2 15,851 + HSERO_RS00045 0.75 +2.4 15,962 - HSERO_RS00045 0.86 +0.5 15,971 - HSERO_RS00045 0.86 +0.8 15,994 + HSERO_RS00045 0.89 +0.5 16,276 + -1.3 16,390 - -0.5 16,519 - HSERO_RS00050 0.16 +1.5 16,543 + HSERO_RS00050 0.18 +0.8 16,580 + -0.6 16,639 + HSERO_RS00050 0.25 +0.8 16,669 + HSERO_RS00050 0.27 +1.7 16,720 - HSERO_RS00050 0.31 +0.1 16,822 - HSERO_RS00050 0.39 +0.2 16,843 + HSERO_RS00050 0.40 -0.3 16,843 + HSERO_RS00050 0.40 -0.2 16,885 - HSERO_RS00050 0.44 -0.1 16,914 - HSERO_RS00050 0.46 -0.3 16,962 + HSERO_RS00050 0.49 +0.3 16,962 + HSERO_RS00050 0.49 +0.3 17,048 + HSERO_RS00050 0.56 -0.1
Or see this region's nucleotide sequence