Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00025

Experiment: Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB
7,178	+				-0.2
7,182	+				+0.5
7,184	-				-0.3
7,184	-				-0.3
7,184	-				-2.3
7,184	-				+1.2
7,184	-				+1.0
7,184	-				-0.6
7,184	-				+0.1
7,184	-				+0.1
7,185	-				-0.3
7,189	-				+0.1
7,213	-				+0.2
7,256	+				-0.3
7,256	+				-0.0
7,256	+				-0.3
7,256	+				+0.0
7,256	+				+0.3
7,256	+				+0.0
7,256	+				-0.2
7,256	+				-0.6
7,257	+				-0.1
7,264	-				+0.8
7,264	-				+1.4
7,264	-				+0.3
7,266	+				+0.9
7,267	+				+0.6
7,279	+				-0.5
7,303	+				-0.2
7,307	+				+0.5
7,312	+				+0.4
7,315	-				+0.4
7,315	-				-1.0
7,315	-				-1.2
7,315	-				-2.2
7,328	-				-0.3
7,331	-				-0.8
7,333	+				+0.2
7,336	-				-0.6
7,337	+				-0.5
7,337	+				+0.1
7,338	-				+1.4
7,340	-				-0.0
7,346	+				-0.3
7,346	+				-0.3
7,354	-				+0.7
7,354	-				-3.0
7,354	-				+0.4
7,354	-				+0.5
7,362	-				-0.0
7,363	+				-1.3
7,363	+				+1.6
7,368	+				-0.3
7,368	+				+0.7
7,376	-				+0.3
7,376	-				+0.4
7,395	+				-0.1
7,398	-				-0.2
7,403	+				-0.5
7,403	+				+0.2
7,403	+				+0.6
7,403	-				-1.3
7,408	-				-0.2
7,411	-				+0.4
7,413	-				+1.4
7,413	-				+0.3
7,413	-				+0.1
7,433	+				-0.2
7,436	-				+0.0
7,438	+				-0.7
7,441	-				+0.0
7,448	+				+0.4
7,451	-				-0.4
7,451	-				+1.4
7,451	-				-0.6
7,451	-				+0.3
7,451	-				-0.3
7,456	-				-0.1
7,456	-				-0.6
7,461	+				+1.4
7,461	+				-0.5
7,461	+				-0.4
7,461	+				+2.4
7,461	+				+1.9
7,461	+				+0.9
7,461	+				+0.1
7,461	+				-1.1
7,463	+				+0.6
7,463	+				+0.4
7,466	+				-0.9
7,468	+				+0.4
7,469	-				+0.8
7,469	-				+0.7
7,469	-				+1.4
7,469	-				+1.3
7,469	-				+0.5
7,469	-				+4.0
7,469	-				-1.0
7,469	-				-0.3
7,469	-				+0.4
7,469	-				+2.3
7,469	-				-0.1
7,471	+				-0.6
7,480	-				-0.3
7,503	+				-1.2
7,503	+				+1.0
7,510	-				+0.2
7,511	-				-0.4
7,511	-				-0.7
7,511	-				+1.5
7,514	-				+0.2
7,520	-				-0.5
7,522	-				-0.0
7,581	+				+2.0
7,583	+				-1.7
7,606	+				-0.9
7,607	+				-0.6
7,607	+				+0.5
7,615	+				-2.1
7,615	-				-0.3
7,615	-				+1.6
7,615	-				-0.2
7,615	-				-2.6
7,615	-				+0.4
7,617	+				+0.3
7,617	+				+0.8
7,623	-				+0.6
7,627	+				-0.5
7,630	+				+0.7
7,632	+				-0.4
7,635	-				+0.2
7,635	-				+0.1
7,638	-				+1.5
7,646	-				-0.4
7,648	+				-0.2
7,651	+				-0.2
7,653	+				-0.2
7,658	+				+0.2
7,659	-				-0.9
7,661	-				-0.6
7,666	+		HSERO_RS00020	0.11	-0.4
7,666	-		HSERO_RS00020	0.11	-0.2
7,666	-		HSERO_RS00020	0.11	+0.4
7,673	-		HSERO_RS00020	0.12	-0.3
7,673	-		HSERO_RS00020	0.12	+1.7
7,686	+		HSERO_RS00020	0.15	-0.2
7,699	+		HSERO_RS00020	0.17	+0.7
7,699	+		HSERO_RS00020	0.17	-0.5
7,699	+		HSERO_RS00020	0.17	-0.9
7,703	+		HSERO_RS00020	0.18	-0.1
7,704	+		HSERO_RS00020	0.18	+1.0
7,708	-		HSERO_RS00020	0.19	+0.3
7,711	+		HSERO_RS00020	0.20	+0.1
7,714	+		HSERO_RS00020	0.20	+0.9
7,714	+		HSERO_RS00020	0.20	-0.1
7,723	-		HSERO_RS00020	0.22	-0.1
7,729	+		HSERO_RS00020	0.23	-0.7
7,737	-		HSERO_RS00020	0.25	+0.4
7,740	+		HSERO_RS00020	0.25	-0.6
7,742	-		HSERO_RS00020	0.26	+0.7
7,747	-		HSERO_RS00020	0.27	-0.3
7,776	+		HSERO_RS00020	0.32	-1.0
7,784	+		HSERO_RS00020	0.34	+0.6
7,784	-		HSERO_RS00020	0.34	+0.6
7,786	+		HSERO_RS00020	0.34	-0.4
7,786	+		HSERO_RS00020	0.34	-0.5
7,786	+		HSERO_RS00020	0.34	-0.2
7,828	+		HSERO_RS00020	0.42	+0.8
7,829	+		HSERO_RS00020	0.43	-0.4
7,829	+		HSERO_RS00020	0.43	-1.4
7,829	+		HSERO_RS00020	0.43	+0.5
7,829	+		HSERO_RS00020	0.43	+1.2
7,829	+		HSERO_RS00020	0.43	-0.3
7,829	+		HSERO_RS00020	0.43	+0.7
7,829	+		HSERO_RS00020	0.43	-0.2
7,835	+		HSERO_RS00020	0.44	-0.3
7,836	-		HSERO_RS00020	0.44	+2.0
7,836	-		HSERO_RS00020	0.44	-0.4
7,837	-		HSERO_RS00020	0.44	-1.3
7,837	-		HSERO_RS00020	0.44	-1.1
7,837	-		HSERO_RS00020	0.44	-1.3
7,837	-		HSERO_RS00020	0.44	-1.4
7,837	-		HSERO_RS00020	0.44	+0.4
7,837	-		HSERO_RS00020	0.44	+0.5
7,837	-		HSERO_RS00020	0.44	-0.9
7,837	-		HSERO_RS00020	0.44	-2.1
7,837	-		HSERO_RS00020	0.44	+1.5
7,849	+		HSERO_RS00020	0.47	-0.0
7,849	+		HSERO_RS00020	0.47	+0.1
7,851	+		HSERO_RS00020	0.47	-0.4
7,866	-		HSERO_RS00020	0.50	+0.1
7,868	+		HSERO_RS00020	0.50	-0.4
7,868	+		HSERO_RS00020	0.50	-0.4
7,868	+		HSERO_RS00020	0.50	-0.0
7,870	+		HSERO_RS00020	0.51	-0.2
7,876	-		HSERO_RS00020	0.52	-0.1
7,876	-		HSERO_RS00020	0.52	-0.9
7,876	-		HSERO_RS00020	0.52	+0.5
7,877	+		HSERO_RS00020	0.52	-0.8
7,877	+		HSERO_RS00020	0.52	-0.5
7,877	+		HSERO_RS00020	0.52	+0.2
7,880	+		HSERO_RS00020	0.53	-1.4
7,880	+		HSERO_RS00020	0.53	-0.1
7,880	+		HSERO_RS00020	0.53	+0.1
7,880	-		HSERO_RS00020	0.53	-0.9
7,883	-		HSERO_RS00020	0.53	-1.2
7,888	-		HSERO_RS00020	0.54	+0.3
7,888	-		HSERO_RS00020	0.54	+0.3
7,888	-		HSERO_RS00020	0.54	-0.4
7,888	-		HSERO_RS00020	0.54	+1.2
7,888	-		HSERO_RS00020	0.54	+0.5
7,888	-		HSERO_RS00020	0.54	+0.2
7,888	-		HSERO_RS00020	0.54	+0.3
7,891	+		HSERO_RS00020	0.55	+1.2
7,894	-		HSERO_RS00020	0.55	-0.1
7,908	+		HSERO_RS00020	0.58	-0.5
7,908	+		HSERO_RS00020	0.58	+0.6
7,908	+		HSERO_RS00020	0.58	+0.3
7,916	-		HSERO_RS00020	0.60	-1.1
7,916	-		HSERO_RS00020	0.60	-0.5
7,922	+		HSERO_RS00020	0.61	-1.4
7,922	+		HSERO_RS00020	0.61	-0.4
7,930	-		HSERO_RS00020	0.62	+0.8
7,955	+		HSERO_RS00020	0.67	+1.7
7,955	+		HSERO_RS00020	0.67	+0.2
7,955	+		HSERO_RS00020	0.67	+0.2
7,955	+		HSERO_RS00020	0.67	+1.0
7,955	+		HSERO_RS00020	0.67	+0.2
7,955	+		HSERO_RS00020	0.67	-0.0
7,955	+		HSERO_RS00020	0.67	+0.1
7,955	+		HSERO_RS00020	0.67	+1.5
7,955	+		HSERO_RS00020	0.67	-0.5
7,955	+		HSERO_RS00020	0.67	-1.1
7,963	-		HSERO_RS00020	0.69	+0.9
7,964	-		HSERO_RS00020	0.69	+0.1
7,964	-		HSERO_RS00020	0.69	+0.9
7,964	-		HSERO_RS00020	0.69	+0.2
7,985	+		HSERO_RS00020	0.73	-0.7
7,985	+		HSERO_RS00020	0.73	-1.3
7,992	-		HSERO_RS00020	0.74	+0.7
8,002	-		HSERO_RS00020	0.76	+0.2
8,005	+		HSERO_RS00020	0.77	-1.8
8,013	-		HSERO_RS00020	0.79	+0.2
8,021	-		HSERO_RS00020	0.80	-0.1
8,034	+		HSERO_RS00020	0.83	+1.2
8,034	+		HSERO_RS00020	0.83	-0.2
8,043	+		HSERO_RS00020	0.84	+1.6
8,043	+		HSERO_RS00020	0.84	-0.9
8,043	+		HSERO_RS00020	0.84	-0.7
8,045	+		HSERO_RS00020	0.85	+0.3
8,045	+		HSERO_RS00020	0.85	-0.3
8,045	+		HSERO_RS00020	0.85	-0.8
8,045	-		HSERO_RS00020	0.85	-0.2
8,051	-		HSERO_RS00020	0.86	+0.2
8,051	-		HSERO_RS00020	0.86	+0.3
8,052	+		HSERO_RS00020	0.86	-0.1
8,052	+		HSERO_RS00020	0.86	+0.4
8,053	-		HSERO_RS00020	0.86	-1.0
8,060	-		HSERO_RS00020	0.88	-0.3
8,060	-		HSERO_RS00020	0.88	-0.5
8,060	-		HSERO_RS00020	0.88	+0.2
8,087	-				-1.9
8,092	-				-0.4
8,114	+				-0.4
8,116	+				-0.4
8,119	-				-0.9
8,174	+				+3.9
8,174	+				-2.0
8,174	+				-0.8
8,174	+				+0.7
8,174	+				+0.2
8,174	+				-0.1
8,179	+				-1.5
8,179	+				-1.1
8,179	+				-1.2
8,179	+				-1.0
8,179	+				-1.1
8,179	+				-0.2
8,179	+				+1.6
8,179	+				-0.5
8,179	+				+0.3
8,182	-				+0.7
8,182	-				-1.1
8,182	-				-0.4
8,184	+				-0.0
8,184	+				-0.5
8,184	+				-0.2
8,184	+				-0.3
8,184	+				-0.5
8,184	+				+0.3
8,187	-				+0.6
8,187	-				-1.9
8,187	-				-0.4
8,187	-				+0.9
8,187	-				-1.0
8,187	-				+0.3
8,187	-				+2.2
8,187	-				+0.8
8,187	-				+0.4
8,187	-				+0.4
8,187	-				-0.2
8,192	-				+0.7
8,194	+				-0.1
8,198	+				-0.9
8,198	+				-0.1
8,200	+				+0.5
8,200	+				-0.2
8,200	+				-0.1
8,200	+				-0.2
8,203	+				-1.8
8,206	-				-1.1
8,206	-				-0.1
8,206	-				-0.3
8,206	-				+1.0
8,206	-				-0.8
8,207	+				-2.6
8,208	-				+0.9
8,208	-				+0.3
8,211	-				+0.1
8,223	-				-0.0
8,223	-				+0.6
8,227	+				-0.3
8,235	-				-0.1
8,254	+				+0.9
8,254	+				+0.5
8,254	+				+0.2
8,254	+				-1.0
8,256	+				-2.5
8,256	+				+0.1
8,257	-				+1.7
8,262	-				-1.6
8,262	-				-0.4
8,262	-				-0.5
8,262	-				+0.8
8,262	-				-2.3
8,264	-				+0.7
8,264	-				-0.5
8,264	-				-1.2
8,264	-				-0.5
8,266	+				-0.7
8,266	+				+1.0
8,266	+				+1.1
8,268	+				+0.1
8,268	+				-0.2
8,269	-				-0.2
8,269	-				-0.3
8,269	-				+1.0
8,269	-				-0.0
8,274	-				-0.5
8,276	-				-1.1
8,283	+				+0.3
8,284	-				+1.0
8,299	+				+0.2
8,299	+				+0.4
8,325	+				+0.3
8,338	-				+0.0
8,343	-				-0.2
8,346	+				+2.0
8,346	+				+0.9
8,346	+				+0.2
8,346	+				-0.8
8,351	+				+0.3
8,351	+				+2.3
8,354	-				+0.1
8,354	-				-0.2
8,354	-				-1.8
8,354	-				+0.9
8,355	-				-0.6
8,359	-				+0.5
8,369	+				-0.3
8,369	-				+0.7
8,373	+				+0.5
8,378	-				+0.3
8,381	-				-0.3
8,381	-				+0.1
8,392	+				-0.5
8,397	+				-0.3
8,397	+				-1.3
8,397	+				-0.1
8,398	+				-3.2
8,398	+				-0.7
8,398	+				-0.6
8,398	+				-0.6
8,400	-				-1.1
8,405	-				-1.0
8,405	-				+0.2
8,406	-				-1.3
8,406	-				+1.2
8,426	+				+0.1
8,426	+				-0.1
8,426	-				+0.8
8,436	-				+0.8
8,439	+				+0.6
8,450	+				-0.1
8,450	+				-0.3
8,450	+				+0.8
8,450	+				+0.4
8,450	+				-0.4
8,450	+				-1.2
8,450	+				-1.2
8,458	-				+0.1
8,458	-				+0.5
8,458	-				-1.8
8,458	-				+0.2
8,460	+				+0.1
8,462	+				-0.2
8,463	-				+0.5
8,468	-				+0.4
8,496	+		HSERO_RS00025	0.11	-1.3
8,497	+		HSERO_RS00025	0.11	+1.5
8,498	+		HSERO_RS00025	0.11	+0.7
8,498	+		HSERO_RS00025	0.11	-0.8
8,498	+		HSERO_RS00025	0.11	-0.2
8,498	+		HSERO_RS00025	0.11	+0.0
8,503	+		HSERO_RS00025	0.11	-0.5
8,503	+		HSERO_RS00025	0.11	+3.2
8,503	+		HSERO_RS00025	0.11	+1.4
8,504	-		HSERO_RS00025	0.11	-0.3
8,510	+		HSERO_RS00025	0.11	+0.5
8,511	-		HSERO_RS00025	0.11	+3.4
8,511	-		HSERO_RS00025	0.11	-0.1
8,511	-		HSERO_RS00025	0.11	+0.3
8,511	-		HSERO_RS00025	0.11	-0.9
8,511	-		HSERO_RS00025	0.11	-0.1
8,514	+		HSERO_RS00025	0.11	+0.6
8,514	+		HSERO_RS00025	0.11	+0.6
8,520	+		HSERO_RS00025	0.11	+0.9
8,520	+		HSERO_RS00025	0.11	-0.1
8,522	-		HSERO_RS00025	0.12	-0.7
8,522	-		HSERO_RS00025	0.12	-0.4
8,525	+		HSERO_RS00025	0.12	-1.3
8,525	+		HSERO_RS00025	0.12	+0.2
8,525	+		HSERO_RS00025	0.12	-0.6
8,525	+		HSERO_RS00025	0.12	+0.5
8,525	+		HSERO_RS00025	0.12	-0.3
8,525	+		HSERO_RS00025	0.12	-0.4
8,525	+				-2.2
8,525	+		HSERO_RS00025	0.12	+0.8
8,528	-		HSERO_RS00025	0.12	-0.7
8,528	-		HSERO_RS00025	0.12	-1.2
8,533	-		HSERO_RS00025	0.12	+0.2
8,533	-		HSERO_RS00025	0.12	-1.1
8,533	-		HSERO_RS00025	0.12	-0.4
8,533	-		HSERO_RS00025	0.12	-0.2
8,533	-		HSERO_RS00025	0.12	-0.9
8,533	-		HSERO_RS00025	0.12	+1.2
8,533	-		HSERO_RS00025	0.12	-0.6
8,533	-		HSERO_RS00025	0.12	+0.5
8,533	-		HSERO_RS00025	0.12	+2.0
8,533	-		HSERO_RS00025	0.12	-0.4
8,533	-		HSERO_RS00025	0.12	-0.0
8,534	-		HSERO_RS00025	0.12	+0.2
8,544	+		HSERO_RS00025	0.12	-0.6
8,551	+		HSERO_RS00025	0.13	+0.9
8,552	+		HSERO_RS00025	0.13	-0.4
8,557	-		HSERO_RS00025	0.13	+0.8
8,562	-		HSERO_RS00025	0.13	-0.9
8,586	-		HSERO_RS00025	0.14	-0.8
8,602	+		HSERO_RS00025	0.14	-1.1
8,602	+		HSERO_RS00025	0.14	-0.2
8,602	+		HSERO_RS00025	0.14	-0.7
8,602	+		HSERO_RS00025	0.14	+0.6
8,610	-		HSERO_RS00025	0.14	+1.2
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11,926	-		HSERO_RS00030	0.58	+0.0
11,926	-		HSERO_RS00030	0.58	-0.9
11,931	+		HSERO_RS00030	0.58	+1.0
11,931	+		HSERO_RS00030	0.58	+0.2
11,932	-		HSERO_RS00030	0.58	-0.5
11,932	-		HSERO_RS00030	0.58	-0.5
11,932	-		HSERO_RS00030	0.58	-0.1
11,932	-		HSERO_RS00030	0.58	+0.8
11,932	-		HSERO_RS00030	0.58	+0.8
11,932	-		HSERO_RS00030	0.58	+0.7
11,932	-		HSERO_RS00030	0.58	-0.3
11,932	-		HSERO_RS00030	0.58	+0.9
11,939	-		HSERO_RS00030	0.59	-0.1
11,939	-		HSERO_RS00030	0.59	-0.6
11,980	+		HSERO_RS00030	0.63	-0.2
11,980	+		HSERO_RS00030	0.63	+0.6
11,980	-		HSERO_RS00030	0.63	-0.5
11,986	+		HSERO_RS00030	0.64	-2.7
11,986	+		HSERO_RS00030	0.64	+0.4
11,986	+		HSERO_RS00030	0.64	+0.7
11,986	+		HSERO_RS00030	0.64	+0.3
11,994	-		HSERO_RS00030	0.65	+0.6
11,994	-		HSERO_RS00030	0.65	+0.2
11,994	-		HSERO_RS00030	0.65	-0.5
11,994	-		HSERO_RS00030	0.65	-0.2
11,994	-		HSERO_RS00030	0.65	-0.2
12,006	-		HSERO_RS00030	0.66	+1.2
12,006	-		HSERO_RS00030	0.66	+0.3
12,009	+		HSERO_RS00030	0.66	-0.3
12,018	+		HSERO_RS00030	0.67	+2.9
12,018	+		HSERO_RS00030	0.67	-0.4
12,018	+		HSERO_RS00030	0.67	-0.1
12,018	+		HSERO_RS00030	0.67	+0.4
12,026	-		HSERO_RS00030	0.68	-0.5
12,026	-		HSERO_RS00030	0.68	-0.3
12,026	-		HSERO_RS00030	0.68	+1.5
12,028	+		HSERO_RS00030	0.68	+0.3
12,033	+		HSERO_RS00030	0.69	-0.2
12,034	-		HSERO_RS00030	0.69	-0.6
12,053	+		HSERO_RS00030	0.71	+1.0
12,061	-		HSERO_RS00030	0.71	+0.7
12,070	+		HSERO_RS00030	0.72	-0.4
12,112	-		HSERO_RS00030	0.76	+1.2
12,113	+				-1.6
12,122	-		HSERO_RS00030	0.77	+0.1
12,128	-		HSERO_RS00030	0.78	+0.0
12,161	+		HSERO_RS00030	0.81	-0.9