Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03383

Experiment: PYE with Sisomicin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Sisomicin 0.004 mg/ml
3,554,242	-		CCNA_03382	0.33	+0.4
3,554,242	-		CCNA_03382	0.33	-2.7
3,554,242	-		CCNA_03382	0.33	-0.8
3,554,262	-		CCNA_03382	0.34	-0.4
3,554,327	+		CCNA_03382	0.39	-0.8
3,554,340	+				+1.2
3,554,359	+		CCNA_03382	0.42	-1.5
3,554,379	-		CCNA_03382	0.43	-0.1
3,554,387	+		CCNA_03382	0.44	+0.0
3,554,398	+		CCNA_03382	0.45	+0.7
3,554,406	-		CCNA_03382	0.45	+1.2
3,554,406	-		CCNA_03382	0.45	-0.3
3,554,422	-		CCNA_03382	0.46	-1.2
3,554,425	+		CCNA_03382	0.47	-3.0
3,554,433	-		CCNA_03382	0.47	+0.4
3,554,448	-		CCNA_03382	0.48	-0.3
3,554,462	+		CCNA_03382	0.50	+0.0
3,554,467	+		CCNA_03382	0.50	-1.3
3,554,475	-		CCNA_03382	0.51	+0.4
3,554,476	-		CCNA_03382	0.51	+0.6
3,554,477	+		CCNA_03382	0.51	-0.3
3,554,485	-		CCNA_03382	0.51	-0.3
3,554,486	-		CCNA_03382	0.51	-2.7
3,554,507	+		CCNA_03382	0.53	+0.1
3,554,516	-		CCNA_03382	0.54	-1.2
3,554,518	+		CCNA_03382	0.54	-0.5
3,554,545	-		CCNA_03382	0.56	-1.9
3,554,561	-		CCNA_03382	0.57	-0.6
3,554,566	-		CCNA_03382	0.58	-1.3
3,554,580	+		CCNA_03382	0.59	-1.0
3,554,613	+		CCNA_03382	0.61	+0.9
3,554,629	+		CCNA_03382	0.62	-0.7
3,554,652	+		CCNA_03382	0.64	+1.9
3,554,654	-		CCNA_03382	0.64	-0.9
3,554,665	+		CCNA_03382	0.65	-0.6
3,554,665	+		CCNA_03382	0.65	-1.5
3,554,714	+		CCNA_03382	0.69	+0.9
3,554,722	-		CCNA_03382	0.70	-0.6
3,554,734	+		CCNA_03382	0.70	+0.7
3,554,734	+		CCNA_03382	0.70	-1.5
3,554,742	-		CCNA_03382	0.71	-1.7
3,554,745	+		CCNA_03382	0.71	+0.5
3,554,745	+		CCNA_03382	0.71	-1.1
3,554,753	-		CCNA_03382	0.72	+0.9
3,554,760	+		CCNA_03382	0.72	+0.0
3,554,768	-		CCNA_03382	0.73	-1.3
3,554,791	-		CCNA_03382	0.75	-3.0
3,554,803	-		CCNA_03382	0.76	-0.7
3,554,819	-		CCNA_03382	0.77	-0.3
3,554,821	+		CCNA_03382	0.77	+0.3
3,554,821	+		CCNA_03382	0.77	-0.3
3,554,829	-		CCNA_03382	0.78	-0.6
3,554,829	-		CCNA_03382	0.78	+0.0
3,554,831	+		CCNA_03382	0.78	+0.3
3,554,894	-		CCNA_03382	0.83	-1.8
3,554,898	-		CCNA_03382	0.83	+0.2
3,554,898	-		CCNA_03382	0.83	+1.4
3,554,898	-		CCNA_03382	0.83	+1.0
3,554,920	-		CCNA_03382	0.85	-0.7
3,554,922	+		CCNA_03382	0.85	+2.6
3,554,930	-		CCNA_03382	0.85	+1.9
3,554,970	-		CCNA_03382	0.89	+0.9
3,554,992	+				+0.8
3,555,002	+				+0.6
3,555,007	+				+0.7
3,555,016	-				-0.6
3,555,065	+				+0.9
3,555,099	-				-1.0
3,555,114	+				-0.6
3,555,114	+				+0.0
3,555,124	+				+2.1
3,555,134	-				-0.9
3,555,134	-				+0.0
3,555,134	-				-1.9
3,555,134	-				-1.6
3,555,134	-				-1.7
3,555,134	-				-0.4
3,555,134	-				+0.0
3,555,161	+				+0.4
3,555,235	-				+0.5
3,555,248	+				-1.8
3,555,265	+				+0.4
3,555,307	-				-0.8
3,555,318	+				+0.6
3,555,318	+				+0.0
3,555,326	-				+0.7
3,555,331	+				-1.9
3,555,339	-				+0.6
3,555,345	-				-0.5
3,555,359	+				+0.0
3,555,359	+				+0.4
3,555,359	+				-1.0
3,555,367	-				+0.4
3,555,367	-				-1.7
3,555,367	-				-1.5
3,555,367	-				-0.3
3,555,367	-				-2.6
3,555,367	-				-1.3
3,555,372	-				-0.7
3,555,386	+				-0.7
3,555,387	+				-1.3
3,555,404	-				-0.9
3,555,416	+				-0.7
3,555,490	+		CCNA_03383	0.14	-1.3
3,555,531	-		CCNA_03383	0.16	+0.4
3,555,550	-		CCNA_03383	0.17	-3.0
3,555,554	+		CCNA_03383	0.17	-0.7
3,555,562	-		CCNA_03383	0.18	-3.1
3,555,562	-		CCNA_03383	0.18	-2.4
3,555,588	-		CCNA_03383	0.19	+1.6
3,555,588	-		CCNA_03383	0.19	-1.2
3,555,595	-		CCNA_03383	0.19	-1.3
3,555,616	+		CCNA_03383	0.21	-0.6
3,555,616	+		CCNA_03383	0.21	+0.9
3,555,651	+		CCNA_03383	0.22	-1.4
3,555,693	-		CCNA_03383	0.25	-2.7
3,555,715	+		CCNA_03383	0.26	+0.2
3,555,723	-		CCNA_03383	0.26	+0.7
3,555,771	+		CCNA_03383	0.29	-0.4
3,555,779	-		CCNA_03383	0.29	+0.3
3,555,779	-		CCNA_03383	0.29	-0.2
3,555,779	-		CCNA_03383	0.29	+0.6
3,555,779	-		CCNA_03383	0.29	-0.4
3,555,781	+		CCNA_03383	0.29	+0.0
3,555,781	+		CCNA_03383	0.29	-0.6
3,555,789	-		CCNA_03383	0.30	-2.7
3,555,789	-		CCNA_03383	0.30	+1.2
3,555,789	-		CCNA_03383	0.30	-0.5
3,555,789	-		CCNA_03383	0.30	-0.2
3,555,789	-		CCNA_03383	0.30	-0.3
3,555,789	-		CCNA_03383	0.30	-2.0
3,555,789	-		CCNA_03383	0.30	-0.2
3,555,789	-		CCNA_03383	0.30	-1.9
3,555,789	-		CCNA_03383	0.30	-1.3
3,555,791	-		CCNA_03383	0.30	+0.4
3,555,799	+		CCNA_03383	0.30	-0.4
3,555,804	+		CCNA_03383	0.31	-1.3
3,555,807	-		CCNA_03383	0.31	-1.2
3,555,812	-		CCNA_03383	0.31	-1.5
3,555,847	-		CCNA_03383	0.33	-0.9
3,555,847	-		CCNA_03383	0.33	-2.6
3,555,849	-		CCNA_03383	0.33	-0.6
3,555,849	-		CCNA_03383	0.33	+1.2
3,555,849	-		CCNA_03383	0.33	+0.9
3,555,865	+		CCNA_03383	0.34	-1.0
3,555,865	+		CCNA_03383	0.34	-0.1
3,555,900	+		CCNA_03383	0.36	-1.5
3,555,900	+		CCNA_03383	0.36	+0.1
3,555,900	+		CCNA_03383	0.36	-2.2
3,555,900	+		CCNA_03383	0.36	-1.1
3,555,900	+		CCNA_03383	0.36	-0.7
3,555,908	-		CCNA_03383	0.36	-1.6
3,555,908	-		CCNA_03383	0.36	-1.2
3,555,908	-		CCNA_03383	0.36	-2.2
3,555,908	-		CCNA_03383	0.36	-0.9
3,555,908	-		CCNA_03383	0.36	-0.1
3,555,908	-		CCNA_03383	0.36	-2.4
3,555,910	+		CCNA_03383	0.36	-1.4
3,555,910	+		CCNA_03383	0.36	-0.9
3,555,932	-		CCNA_03383	0.38	-0.2
3,555,943	+		CCNA_03383	0.38	-0.7
3,555,995	+		CCNA_03383	0.41	-0.8
3,555,995	+		CCNA_03383	0.41	-2.3
3,555,995	+		CCNA_03383	0.41	+0.6
3,555,995	+		CCNA_03383	0.41	-0.9
3,555,995	+		CCNA_03383	0.41	-2.7
3,555,995	+		CCNA_03383	0.41	-2.1
3,555,995	+		CCNA_03383	0.41	-0.5
3,555,995	+		CCNA_03383	0.41	-0.5
3,555,995	+		CCNA_03383	0.41	-1.0
3,556,003	-		CCNA_03383	0.41	-1.9
3,556,003	-		CCNA_03383	0.41	-0.7
3,556,003	-		CCNA_03383	0.41	-0.7
3,556,003	-		CCNA_03383	0.41	-0.4
3,556,003	-		CCNA_03383	0.41	-1.1
3,556,003	-		CCNA_03383	0.41	-1.8
3,556,003	-		CCNA_03383	0.41	+0.7
3,556,003	-		CCNA_03383	0.41	-0.4
3,556,003	-		CCNA_03383	0.41	-1.1
3,556,003	-		CCNA_03383	0.41	-1.0
3,556,003	-		CCNA_03383	0.41	-1.8
3,556,016	+		CCNA_03383	0.42	-0.7
3,556,024	-		CCNA_03383	0.43	-1.0
3,556,031	+		CCNA_03383	0.43	-0.6
3,556,049	-		CCNA_03383	0.44	+0.9
3,556,049	-		CCNA_03383	0.44	-0.6
3,556,056	-		CCNA_03383	0.44	-0.1
3,556,063	+		CCNA_03383	0.45	-1.8
3,556,063	+		CCNA_03383	0.45	-3.2
3,556,080	-		CCNA_03383	0.46	-1.7
3,556,080	-		CCNA_03383	0.46	-1.1
3,556,085	+		CCNA_03383	0.46	-2.3
3,556,092	-		CCNA_03383	0.46	-2.6
3,556,093	-		CCNA_03383	0.46	-0.3
3,556,160	-		CCNA_03383	0.50	-2.5
3,556,174	+		CCNA_03383	0.51	-0.9
3,556,187	-		CCNA_03383	0.51	-2.0
3,556,196	+		CCNA_03383	0.52	-0.6
3,556,199	+		CCNA_03383	0.52	-0.6
3,556,209	+		CCNA_03383	0.53	-1.3
3,556,325	-		CCNA_03383	0.59	-1.1
3,556,353	-		CCNA_03383	0.60	-2.5
3,556,355	+		CCNA_03383	0.60	-1.5
3,556,363	-		CCNA_03383	0.61	-0.4
3,556,363	-		CCNA_03383	0.61	+0.2
3,556,363	-		CCNA_03383	0.61	-1.0
3,556,365	-		CCNA_03383	0.61	-0.7
3,556,373	-		CCNA_03383	0.61	-0.1
3,556,390	-		CCNA_03383	0.62	-0.9
3,556,406	-		CCNA_03383	0.63	-1.4
3,556,408	+		CCNA_03383	0.63	+0.4
3,556,411	-		CCNA_03383	0.63	-2.0
3,556,416	-		CCNA_03383	0.64	-0.4
3,556,416	-		CCNA_03383	0.64	-1.9
3,556,430	-		CCNA_03383	0.64	-1.1
3,556,491	-		CCNA_03383	0.68	-2.0
3,556,543	-		CCNA_03383	0.71	+0.6
3,556,553	-		CCNA_03383	0.71	+0.5
3,556,563	-		CCNA_03383	0.72	-1.7
3,556,580	+		CCNA_03383	0.73	-2.1
3,556,632	-		CCNA_03383	0.75	-1.1
3,556,634	-		CCNA_03383	0.75	+0.0
3,556,655	+		CCNA_03383	0.77	-1.8
3,556,673	-		CCNA_03383	0.78	-1.1
3,556,684	+		CCNA_03383	0.78	-0.3
3,556,685	-		CCNA_03383	0.78	-1.9
3,556,686	+		CCNA_03383	0.78	+0.6
3,556,770	+		CCNA_03383	0.83	+0.5
3,556,778	-		CCNA_03383	0.83	+0.0
3,556,815	-		CCNA_03383	0.85	-1.6
3,556,819	+		CCNA_03383	0.85	-0.1
3,556,819	+		CCNA_03383	0.85	+0.5
3,556,819	+		CCNA_03383	0.85	-1.7
3,556,828	-		CCNA_03383	0.86	-1.8
3,556,842	+		CCNA_03383	0.87	-1.3
3,556,867	+		CCNA_03383	0.88	-0.1
3,556,875	-		CCNA_03383	0.88	-2.1
3,556,875	-		CCNA_03383	0.88	-2.0
3,556,875	-		CCNA_03383	0.88	+0.6
3,556,879	+		CCNA_03383	0.89	-0.1
3,556,881	-		CCNA_03383	0.89	-0.1
3,556,897	-		CCNA_03383	0.90	-1.1
3,556,954	+				+1.6
3,557,009	+				+0.8
3,557,010	-				+0.4
3,557,017	-				-0.7
3,557,023	-				-0.7
3,557,047	+				-1.9
3,557,056	-				-0.5
3,557,089	-				+0.6
3,557,094	-				+2.6
3,557,116	+				-2.1
3,557,116	+				-1.5
3,557,159	+				-1.7
3,557,182	-				-0.8
3,557,262	+		CCNA_03384	0.21	-0.2
3,557,325	+		CCNA_03384	0.48	+0.4
3,557,401	+		CCNA_03384	0.81	+0.5
3,557,437	+				+1.2
3,557,558	+				+0.5
3,557,566	-				+0.7
3,557,604	-				+1.1
3,557,644	+				-2.4
3,557,644	+				-2.3
3,557,645	-				+2.0
3,557,652	-				+0.9
3,557,729	+		CCNA_03385	0.17	-1.3
3,557,748	-		CCNA_03385	0.21	+1.2
3,557,762	+		CCNA_03385	0.24	+0.8
3,557,785	-		CCNA_03385	0.28	+0.6
3,557,798	-		CCNA_03385	0.31	+0.6
3,557,828	+		CCNA_03385	0.37	+0.1
3,557,830	+		CCNA_03385	0.38	-1.1
3,557,854	-		CCNA_03385	0.43	-0.4
3,557,865	-		CCNA_03385	0.45	+0.4
3,557,865	-		CCNA_03385	0.45	+1.3
3,557,865	-		CCNA_03385	0.45	+0.7
3,557,885	-		CCNA_03385	0.49	+0.7
3,557,890	+		CCNA_03385	0.50	+0.8
3,557,890	+		CCNA_03385	0.50	-0.2
3,557,898	-		CCNA_03385	0.52	-0.0
3,557,900	+		CCNA_03385	0.52	-1.2
3,557,924	-		CCNA_03385	0.57	-0.4
3,557,969	+		CCNA_03385	0.66	-1.0
3,558,042	+		CCNA_03385	0.81	-1.9
3,558,074	+		CCNA_03385	0.88	+0.3