Experiment: PYE with Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02940 and CCNA_02941 are separated by 154 nucleotides CCNA_02941 and CCNA_02942 are separated by 113 nucleotides
CCNA_02940: CCNA_02940 - methyl-accepting chemotaxis protein, at 3,099,784 to 3,101,388
_02940
CCNA_02941: CCNA_02941 - transcription elongation factor greA, at 3,101,543 to 3,102,016
_02941
CCNA_02942: CCNA_02942 - nucleoside-diphosphate-sugar epimerase, at 3,102,130 to 3,103,299
_02942
Position (kb)
3101
3102
3103 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 3100.546 kb on - strand, within CCNA_02940 at 3100.566 kb on - strand, within CCNA_02940 at 3100.568 kb on - strand, within CCNA_02940 at 3100.581 kb on + strand, within CCNA_02940 at 3100.622 kb on - strand, within CCNA_02940 at 3100.647 kb on - strand, within CCNA_02940 at 3100.671 kb on + strand, within CCNA_02940 at 3100.697 kb on + strand, within CCNA_02940 at 3100.705 kb on - strand, within CCNA_02940 at 3100.710 kb on - strand, within CCNA_02940 at 3100.759 kb on - strand, within CCNA_02940 at 3100.767 kb on - strand, within CCNA_02940 at 3100.788 kb on - strand, within CCNA_02940 at 3100.790 kb on - strand, within CCNA_02940 at 3100.843 kb on + strand, within CCNA_02940 at 3100.843 kb on + strand, within CCNA_02940 at 3100.853 kb on + strand, within CCNA_02940 at 3101.009 kb on - strand, within CCNA_02940 at 3101.040 kb on + strand, within CCNA_02940 at 3101.076 kb on + strand, within CCNA_02940 at 3101.094 kb on + strand, within CCNA_02940 at 3101.160 kb on + strand, within CCNA_02940 at 3101.187 kb on + strand, within CCNA_02940 at 3101.188 kb on + strand, within CCNA_02940 at 3101.201 kb on - strand, within CCNA_02940 at 3101.209 kb on - strand, within CCNA_02940 at 3101.211 kb on + strand, within CCNA_02940 at 3101.211 kb on + strand, within CCNA_02940 at 3101.213 kb on - strand, within CCNA_02940 at 3101.214 kb on - strand, within CCNA_02940 at 3101.214 kb on - strand, within CCNA_02940 at 3101.214 kb on - strand, within CCNA_02940 at 3101.256 kb on + strand at 3101.266 kb on + strand at 3101.266 kb on + strand at 3101.274 kb on + strand at 3101.274 kb on - strand at 3101.296 kb on - strand at 3101.296 kb on - strand at 3101.337 kb on + strand at 3101.347 kb on + strand at 3101.357 kb on + strand at 3101.357 kb on + strand at 3101.400 kb on + strand at 3101.413 kb on - strand at 3101.413 kb on - strand at 3101.427 kb on + strand at 3101.479 kb on + strand at 3101.485 kb on - strand at 3101.702 kb on + strand, within CCNA_02941 at 3101.702 kb on + strand, within CCNA_02941 at 3101.728 kb on - strand, within CCNA_02941 at 3101.787 kb on - strand, within CCNA_02941 at 3101.800 kb on + strand at 3101.857 kb on + strand, within CCNA_02941 at 3101.905 kb on + strand, within CCNA_02941 at 3101.905 kb on + strand, within CCNA_02941 at 3102.059 kb on + strand at 3102.161 kb on - strand at 3102.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Sisomicin 0.004 mg/ml remove 3,100,546 - CCNA_02940 0.47 +1.4 3,100,566 - CCNA_02940 0.49 -1.6 3,100,568 - CCNA_02940 0.49 +1.0 3,100,581 + CCNA_02940 0.50 +0.1 3,100,622 - CCNA_02940 0.52 +0.6 3,100,647 - CCNA_02940 0.54 -1.5 3,100,671 + CCNA_02940 0.55 -0.9 3,100,697 + CCNA_02940 0.57 +0.2 3,100,705 - CCNA_02940 0.57 +1.2 3,100,710 - CCNA_02940 0.58 -1.7 3,100,759 - CCNA_02940 0.61 +0.0 3,100,767 - CCNA_02940 0.61 +0.1 3,100,788 - CCNA_02940 0.63 -0.1 3,100,790 - CCNA_02940 0.63 -0.6 3,100,843 + CCNA_02940 0.66 -0.4 3,100,843 + CCNA_02940 0.66 +0.1 3,100,853 + CCNA_02940 0.67 +0.8 3,101,009 - CCNA_02940 0.76 -0.8 3,101,040 + CCNA_02940 0.78 +0.8 3,101,076 + CCNA_02940 0.80 -1.3 3,101,094 + CCNA_02940 0.82 +0.5 3,101,160 + CCNA_02940 0.86 +0.2 3,101,187 + CCNA_02940 0.87 +0.9 3,101,188 + CCNA_02940 0.87 +1.1 3,101,201 - CCNA_02940 0.88 +0.9 3,101,209 - CCNA_02940 0.89 +0.7 3,101,211 + CCNA_02940 0.89 -0.6 3,101,211 + CCNA_02940 0.89 -1.0 3,101,213 - CCNA_02940 0.89 +0.6 3,101,214 - CCNA_02940 0.89 +0.7 3,101,214 - CCNA_02940 0.89 -0.8 3,101,214 - CCNA_02940 0.89 -1.1 3,101,256 + -1.7 3,101,266 + +0.2 3,101,266 + +0.6 3,101,274 + -0.8 3,101,274 - +1.0 3,101,296 - +0.3 3,101,296 - +0.2 3,101,337 + -0.3 3,101,347 + +0.1 3,101,357 + +0.9 3,101,357 + -1.2 3,101,400 + +0.7 3,101,413 - +0.9 3,101,413 - -0.2 3,101,427 + +0.8 3,101,479 + +1.8 3,101,485 - +0.7 3,101,702 + CCNA_02941 0.34 +3.6 3,101,702 + CCNA_02941 0.34 +2.8 3,101,728 - CCNA_02941 0.39 +1.1 3,101,787 - CCNA_02941 0.51 +0.1 3,101,800 + +4.9 3,101,857 + CCNA_02941 0.66 +2.9 3,101,905 + CCNA_02941 0.76 +3.6 3,101,905 + CCNA_02941 0.76 +3.5 3,102,059 + +1.5 3,102,161 - -1.0 3,102,174 + +0.6
Or see this region's nucleotide sequence