Experiment: PYE with Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01755 and CCNA_01756 are separated by 97 nucleotides CCNA_01756 and CCNA_01757 are separated by 63 nucleotides CCNA_01757 and CCNA_01758 are separated by 44 nucleotides
CCNA_01755: CCNA_01755 - two component sensor histidine kinase, at 1,881,785 to 1,883,437
_01755
CCNA_01756: CCNA_01756 - hypothetical protein, at 1,883,535 to 1,883,654
_01756
CCNA_01757: CCNA_01757 - dimethyladenosine transferase, at 1,883,718 to 1,884,548
_01757
CCNA_01758: CCNA_01758 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,884,593 to 1,885,594
_01758
Position (kb)
1883
1884
1885 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1882.734 kb on - strand, within CCNA_01755 at 1882.744 kb on - strand, within CCNA_01755 at 1882.774 kb on - strand, within CCNA_01755 at 1882.791 kb on + strand, within CCNA_01755 at 1882.857 kb on + strand, within CCNA_01755 at 1882.875 kb on - strand, within CCNA_01755 at 1882.911 kb on + strand, within CCNA_01755 at 1882.911 kb on + strand, within CCNA_01755 at 1882.919 kb on - strand, within CCNA_01755 at 1882.921 kb on + strand, within CCNA_01755 at 1883.012 kb on - strand, within CCNA_01755 at 1883.039 kb on - strand, within CCNA_01755 at 1883.039 kb on - strand, within CCNA_01755 at 1883.099 kb on + strand, within CCNA_01755 at 1883.111 kb on - strand, within CCNA_01755 at 1883.192 kb on - strand, within CCNA_01755 at 1883.216 kb on - strand, within CCNA_01755 at 1883.226 kb on + strand, within CCNA_01755 at 1883.234 kb on - strand, within CCNA_01755 at 1883.282 kb on + strand at 1883.288 kb on - strand at 1883.298 kb on - strand at 1883.318 kb on + strand at 1883.326 kb on - strand at 1883.369 kb on + strand at 1883.381 kb on + strand at 1883.384 kb on - strand at 1883.434 kb on - strand at 1883.437 kb on + strand at 1883.440 kb on - strand at 1883.445 kb on - strand at 1883.445 kb on - strand at 1883.464 kb on + strand at 1883.466 kb on + strand at 1883.631 kb on + strand, within CCNA_01756 at 1883.636 kb on + strand, within CCNA_01756 at 1883.676 kb on - strand at 1883.726 kb on - strand at 1883.738 kb on + strand at 1883.943 kb on - strand, within CCNA_01757 at 1884.027 kb on - strand, within CCNA_01757 at 1884.037 kb on - strand, within CCNA_01757 at 1884.357 kb on - strand, within CCNA_01757 at 1884.383 kb on - strand, within CCNA_01757 at 1884.556 kb on + strand at 1884.556 kb on + strand at 1884.586 kb on - strand at 1884.598 kb on - strand at 1884.598 kb on - strand at 1884.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Sisomicin 0.004 mg/ml remove 1,882,734 - CCNA_01755 0.57 -0.0 1,882,744 - CCNA_01755 0.58 -0.4 1,882,774 - CCNA_01755 0.60 -1.9 1,882,791 + CCNA_01755 0.61 +0.4 1,882,857 + CCNA_01755 0.65 -1.2 1,882,875 - CCNA_01755 0.66 +1.2 1,882,911 + CCNA_01755 0.68 +1.7 1,882,911 + CCNA_01755 0.68 -0.9 1,882,919 - CCNA_01755 0.69 -0.3 1,882,921 + CCNA_01755 0.69 -0.7 1,883,012 - CCNA_01755 0.74 -0.1 1,883,039 - CCNA_01755 0.76 +1.8 1,883,039 - CCNA_01755 0.76 -0.6 1,883,099 + CCNA_01755 0.79 -0.8 1,883,111 - CCNA_01755 0.80 +1.3 1,883,192 - CCNA_01755 0.85 -0.6 1,883,216 - CCNA_01755 0.87 -0.7 1,883,226 + CCNA_01755 0.87 -0.4 1,883,234 - CCNA_01755 0.88 -0.3 1,883,282 + +0.0 1,883,288 - -1.4 1,883,298 - +0.9 1,883,318 + -0.2 1,883,326 - +1.1 1,883,369 + -1.1 1,883,381 + +0.1 1,883,384 - +0.2 1,883,434 - -0.7 1,883,437 + +1.0 1,883,440 - +0.4 1,883,445 - +0.8 1,883,445 - -0.1 1,883,464 + +0.4 1,883,466 + -1.0 1,883,631 + CCNA_01756 0.80 +0.4 1,883,636 + CCNA_01756 0.84 -2.2 1,883,676 - +1.0 1,883,726 - +0.3 1,883,738 + -1.6 1,883,943 - CCNA_01757 0.27 -0.2 1,884,027 - CCNA_01757 0.37 -1.3 1,884,037 - CCNA_01757 0.38 -1.2 1,884,357 - CCNA_01757 0.77 -0.5 1,884,383 - CCNA_01757 0.80 -0.3 1,884,556 + -0.0 1,884,556 + +1.3 1,884,586 - +1.3 1,884,598 - -0.5 1,884,598 - +0.2 1,884,598 - +2.9
Or see this region's nucleotide sequence