Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00816

Experiment: PYE with Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00815 and CCNA_00816 overlap by 4 nucleotidesCCNA_00816 and CCNA_00817 are separated by 43 nucleotides CCNA_00815: CCNA_00815 - lignostilbene-alpha,beta-dioxygenase, at 878,273 to 879,724 _00815 CCNA_00816: CCNA_00816 - hypothetical protein, at 879,721 to 879,912 _00816 CCNA_00817: CCNA_00817 - L-sorbosone dehydrogenase, at 879,956 to 881,284 _00817 Position (kb) 879 880Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 878.723 kb on + strand, within CCNA_00815at 878.729 kb on - strand, within CCNA_00815at 878.739 kb on - strand, within CCNA_00815at 878.741 kb on + strand, within CCNA_00815at 878.741 kb on + strand, within CCNA_00815at 878.742 kb on + strand, within CCNA_00815at 878.744 kb on + strand, within CCNA_00815at 878.750 kb on - strand, within CCNA_00815at 878.750 kb on - strand, within CCNA_00815at 878.813 kb on + strand, within CCNA_00815at 878.843 kb on - strand, within CCNA_00815at 878.845 kb on + strand, within CCNA_00815at 878.845 kb on + strand, within CCNA_00815at 878.853 kb on - strand, within CCNA_00815at 878.853 kb on - strand, within CCNA_00815at 878.853 kb on - strand, within CCNA_00815at 878.853 kb on - strand, within CCNA_00815at 878.855 kb on + strand, within CCNA_00815at 878.855 kb on + strand, within CCNA_00815at 878.860 kb on + strand, within CCNA_00815at 878.863 kb on - strand, within CCNA_00815at 878.917 kb on + strand, within CCNA_00815at 878.917 kb on + strand, within CCNA_00815at 878.917 kb on + strand, within CCNA_00815at 878.917 kb on + strand, within CCNA_00815at 878.925 kb on - strand, within CCNA_00815at 878.925 kb on - strand, within CCNA_00815at 878.937 kb on + strand, within CCNA_00815at 878.937 kb on + strand, within CCNA_00815at 878.937 kb on + strand, within CCNA_00815at 878.938 kb on - strand, within CCNA_00815at 878.945 kb on - strand, within CCNA_00815at 878.945 kb on - strand, within CCNA_00815at 878.945 kb on - strand, within CCNA_00815at 878.945 kb on - strand, within CCNA_00815at 878.945 kb on - strand, within CCNA_00815at 878.985 kb on + strand, within CCNA_00815at 878.993 kb on - strand, within CCNA_00815at 879.011 kb on - strand, within CCNA_00815at 879.011 kb on - strand, within CCNA_00815at 879.041 kb on - strand, within CCNA_00815at 879.081 kb on + strand, within CCNA_00815at 879.081 kb on + strand, within CCNA_00815at 879.082 kb on - strand, within CCNA_00815at 879.089 kb on - strand, within CCNA_00815at 879.089 kb on - strand, within CCNA_00815at 879.089 kb on - strand, within CCNA_00815at 879.089 kb on - strand, within CCNA_00815at 879.089 kb on - strand, within CCNA_00815at 879.102 kb on - strand, within CCNA_00815at 879.132 kb on + strand, within CCNA_00815at 879.133 kb on + strand, within CCNA_00815at 879.140 kb on - strand, within CCNA_00815at 879.141 kb on - strand, within CCNA_00815at 879.170 kb on - strand, within CCNA_00815at 879.177 kb on + strand, within CCNA_00815at 879.177 kb on + strand, within CCNA_00815at 879.177 kb on + strand, within CCNA_00815at 879.185 kb on - strand, within CCNA_00815at 879.185 kb on - strand, within CCNA_00815at 879.185 kb on - strand, within CCNA_00815at 879.185 kb on - strand, within CCNA_00815at 879.185 kb on - strand, within CCNA_00815at 879.185 kb on - strand, within CCNA_00815at 879.200 kb on + strand, within CCNA_00815at 879.200 kb on + strand, within CCNA_00815at 879.206 kb on - strand, within CCNA_00815at 879.208 kb on - strand, within CCNA_00815at 879.208 kb on - strand, within CCNA_00815at 879.226 kb on - strand, within CCNA_00815at 879.240 kb on - strand, within CCNA_00815at 879.261 kb on - strand, within CCNA_00815at 879.263 kb on - strand, within CCNA_00815at 879.265 kb on + strand, within CCNA_00815at 879.268 kb on - strand, within CCNA_00815at 879.274 kb on + strand, within CCNA_00815at 879.282 kb on - strand, within CCNA_00815at 879.282 kb on - strand, within CCNA_00815at 879.282 kb on - strand, within CCNA_00815at 879.329 kb on + strand, within CCNA_00815at 879.337 kb on - strand, within CCNA_00815at 879.337 kb on - strand, within CCNA_00815at 879.337 kb on - strand, within CCNA_00815at 879.337 kb on - strand, within CCNA_00815at 879.373 kb on + strand, within CCNA_00815at 879.373 kb on + strand, within CCNA_00815at 879.373 kb on + strand, within CCNA_00815at 879.373 kb on - strand, within CCNA_00815at 879.381 kb on - strand, within CCNA_00815at 879.453 kb on - strand, within CCNA_00815at 879.477 kb on + strand, within CCNA_00815at 879.520 kb on + strand, within CCNA_00815at 879.568 kb on + strand, within CCNA_00815at 879.568 kb on + strand, within CCNA_00815at 879.568 kb on + strand, within CCNA_00815at 879.576 kb on - strand, within CCNA_00815at 879.578 kb on + strand, within CCNA_00815at 879.610 kb on - strandat 879.610 kb on - strandat 879.610 kb on - strandat 879.624 kb on + strandat 879.632 kb on - strandat 879.632 kb on - strandat 879.632 kb on - strandat 879.660 kb on + strandat 879.663 kb on - strandat 879.668 kb on - strandat 879.680 kb on - strandat 879.682 kb on + strandat 879.690 kb on - strandat 879.817 kb on + strand, within CCNA_00816at 879.817 kb on - strand, within CCNA_00816at 879.827 kb on - strand, within CCNA_00816at 879.836 kb on - strand, within CCNA_00816at 879.851 kb on + strand, within CCNA_00816at 879.859 kb on - strand, within CCNA_00816at 879.859 kb on - strand, within CCNA_00816at 879.877 kb on + strand, within CCNA_00816at 879.877 kb on + strand, within CCNA_00816at 879.877 kb on + strand, within CCNA_00816at 879.885 kb on - strand, within CCNA_00816at 879.885 kb on - strand, within CCNA_00816at 879.887 kb on + strand, within CCNA_00816at 879.890 kb on - strand, within CCNA_00816at 879.904 kb on - strandat 879.916 kb on - strandat 879.942 kb on + strandat 879.948 kb on + strandat 880.022 kb on + strandat 880.049 kb on + strandat 880.049 kb on + strandat 880.049 kb on + strandat 880.049 kb on + strandat 880.049 kb on + strandat 880.057 kb on - strandat 880.057 kb on - strandat 880.057 kb on - strandat 880.057 kb on - strandat 880.057 kb on - strandat 880.057 kb on - strandat 880.057 kb on - strandat 880.064 kb on - strandat 880.093 kb on + strand, within CCNA_00817at 880.133 kb on + strand, within CCNA_00817at 880.136 kb on - strand, within CCNA_00817at 880.138 kb on - strand, within CCNA_00817at 880.141 kb on - strand, within CCNA_00817at 880.238 kb on + strand, within CCNA_00817at 880.257 kb on + strand, within CCNA_00817at 880.259 kb on + strand, within CCNA_00817at 880.273 kb on - strand, within CCNA_00817at 880.277 kb on + strand, within CCNA_00817at 880.303 kb on + strand, within CCNA_00817at 880.311 kb on - strand, within CCNA_00817at 880.311 kb on - strand, within CCNA_00817at 880.311 kb on - strand, within CCNA_00817at 880.311 kb on - strand, within CCNA_00817at 880.317 kb on + strand, within CCNA_00817at 880.324 kb on - strand, within CCNA_00817at 880.348 kb on + strand, within CCNA_00817at 880.366 kb on - strand, within CCNA_00817at 880.391 kb on + strand, within CCNA_00817at 880.427 kb on - strand, within CCNA_00817at 880.441 kb on + strand, within CCNA_00817at 880.460 kb on - strand, within CCNA_00817at 880.460 kb on - strand, within CCNA_00817at 880.460 kb on - strand, within CCNA_00817at 880.487 kb on + strand, within CCNA_00817at 880.494 kb on + strand, within CCNA_00817at 880.494 kb on + strand, within CCNA_00817at 880.494 kb on + strand, within CCNA_00817at 880.499 kb on + strand, within CCNA_00817at 880.499 kb on + strand, within CCNA_00817at 880.502 kb on - strand, within CCNA_00817at 880.502 kb on - strand, within CCNA_00817at 880.504 kb on + strand, within CCNA_00817at 880.512 kb on - strand, within CCNA_00817at 880.535 kb on + strand, within CCNA_00817at 880.540 kb on + strand, within CCNA_00817at 880.545 kb on + strand, within CCNA_00817at 880.553 kb on - strand, within CCNA_00817at 880.577 kb on - strand, within CCNA_00817at 880.577 kb on - strand, within CCNA_00817at 880.577 kb on - strand, within CCNA_00817at 880.628 kb on - strand, within CCNA_00817at 880.633 kb on - strand, within CCNA_00817at 880.702 kb on - strand, within CCNA_00817at 880.711 kb on + strand, within CCNA_00817at 880.726 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.740 kb on + strand, within CCNA_00817at 880.748 kb on - strand, within CCNA_00817at 880.748 kb on - strand, within CCNA_00817at 880.793 kb on + strand, within CCNA_00817at 880.793 kb on + strand, within CCNA_00817at 880.793 kb on + strand, within CCNA_00817at 880.825 kb on - strand, within CCNA_00817at 880.839 kb on + strand, within CCNA_00817at 880.847 kb on - strand, within CCNA_00817at 880.894 kb on - strand, within CCNA_00817at 880.894 kb on - strand, within CCNA_00817at 880.897 kb on + strand, within CCNA_00817at 880.906 kb on + strand, within CCNA_00817at 880.909 kb on - strand, within CCNA_00817

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Sisomicin 0.004 mg/ml
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878,723 + CCNA_00815 0.31 -2.2
878,729 - CCNA_00815 0.31 +1.4
878,739 - CCNA_00815 0.32 -0.9
878,741 + CCNA_00815 0.32 -1.0
878,741 + CCNA_00815 0.32 -0.9
878,742 + CCNA_00815 0.32 +0.9
878,744 + CCNA_00815 0.32 +0.4
878,750 - CCNA_00815 0.33 +0.5
878,750 - CCNA_00815 0.33 -2.3
878,813 + CCNA_00815 0.37 -0.1
878,843 - CCNA_00815 0.39 +0.7
878,845 + CCNA_00815 0.39 -1.7
878,845 + CCNA_00815 0.39 +0.2
878,853 - CCNA_00815 0.40 -1.3
878,853 - CCNA_00815 0.40 -1.3
878,853 - CCNA_00815 0.40 -0.9
878,853 - CCNA_00815 0.40 -0.2
878,855 + CCNA_00815 0.40 +0.4
878,855 + CCNA_00815 0.40 +0.6
878,860 + CCNA_00815 0.40 +0.2
878,863 - CCNA_00815 0.41 -1.2
878,917 + CCNA_00815 0.44 -0.9
878,917 + CCNA_00815 0.44 -0.9
878,917 + CCNA_00815 0.44 +0.3
878,917 + CCNA_00815 0.44 -0.8
878,925 - CCNA_00815 0.45 -0.7
878,925 - CCNA_00815 0.45 -1.9
878,937 + CCNA_00815 0.46 -0.8
878,937 + CCNA_00815 0.46 -0.3
878,937 + CCNA_00815 0.46 +0.4
878,938 - CCNA_00815 0.46 -1.8
878,945 - CCNA_00815 0.46 +1.1
878,945 - CCNA_00815 0.46 -1.2
878,945 - CCNA_00815 0.46 -1.0
878,945 - CCNA_00815 0.46 -1.6
878,945 - CCNA_00815 0.46 -0.7
878,985 + CCNA_00815 0.49 -0.9
878,993 - CCNA_00815 0.50 -0.9
879,011 - CCNA_00815 0.51 -1.7
879,011 - CCNA_00815 0.51 -0.6
879,041 - CCNA_00815 0.53 +1.1
879,081 + CCNA_00815 0.56 -1.5
879,081 + CCNA_00815 0.56 +1.6
879,082 - CCNA_00815 0.56 +1.4
879,089 - CCNA_00815 0.56 +1.4
879,089 - CCNA_00815 0.56 +1.5
879,089 - CCNA_00815 0.56 -0.4
879,089 - CCNA_00815 0.56 +0.0
879,089 - CCNA_00815 0.56 -0.7
879,102 - CCNA_00815 0.57 -3.4
879,132 + CCNA_00815 0.59 -0.9
879,133 + CCNA_00815 0.59 -0.5
879,140 - CCNA_00815 0.60 -0.1
879,141 - CCNA_00815 0.60 -0.8
879,170 - CCNA_00815 0.62 -0.4
879,177 + CCNA_00815 0.62 -0.9
879,177 + CCNA_00815 0.62 -2.4
879,177 + CCNA_00815 0.62 -2.7
879,185 - CCNA_00815 0.63 -1.6
879,185 - CCNA_00815 0.63 +0.2
879,185 - CCNA_00815 0.63 +0.3
879,185 - CCNA_00815 0.63 -0.4
879,185 - CCNA_00815 0.63 +0.5
879,185 - CCNA_00815 0.63 -0.1
879,200 + CCNA_00815 0.64 +0.8
879,200 + CCNA_00815 0.64 +0.1
879,206 - CCNA_00815 0.64 +1.3
879,208 - CCNA_00815 0.64 -1.2
879,208 - CCNA_00815 0.64 -2.5
879,226 - CCNA_00815 0.66 -0.3
879,240 - CCNA_00815 0.67 +0.2
879,261 - CCNA_00815 0.68 -1.1
879,263 - CCNA_00815 0.68 -0.3
879,265 + CCNA_00815 0.68 -0.2
879,268 - CCNA_00815 0.69 +0.2
879,274 + CCNA_00815 0.69 -0.6
879,282 - CCNA_00815 0.69 -0.4
879,282 - CCNA_00815 0.69 -0.2
879,282 - CCNA_00815 0.69 -1.0
879,329 + CCNA_00815 0.73 -0.5
879,337 - CCNA_00815 0.73 -0.9
879,337 - CCNA_00815 0.73 -1.0
879,337 - CCNA_00815 0.73 -1.3
879,337 - CCNA_00815 0.73 +0.1
879,373 + CCNA_00815 0.76 -0.6
879,373 + CCNA_00815 0.76 -1.6
879,373 + CCNA_00815 0.76 -2.8
879,373 - CCNA_00815 0.76 -1.0
879,381 - CCNA_00815 0.76 +1.1
879,453 - CCNA_00815 0.81 -0.4
879,477 + CCNA_00815 0.83 -0.4
879,520 + CCNA_00815 0.86 -2.2
879,568 + CCNA_00815 0.89 +0.3
879,568 + CCNA_00815 0.89 +0.3
879,568 + CCNA_00815 0.89 +1.3
879,576 - CCNA_00815 0.90 +0.0
879,578 + CCNA_00815 0.90 -1.6
879,610 - -0.6
879,610 - +0.0
879,610 - -2.8
879,624 + +0.5
879,632 - -1.3
879,632 - +0.8
879,632 - -0.5
879,660 + +0.6
879,663 - -1.1
879,668 - +0.4
879,680 - -1.0
879,682 + +1.8
879,690 - -2.0
879,817 + CCNA_00816 0.50 -1.7
879,817 - CCNA_00816 0.50 +1.8
879,827 - CCNA_00816 0.55 -0.6
879,836 - CCNA_00816 0.60 -0.1
879,851 + CCNA_00816 0.68 -0.7
879,859 - CCNA_00816 0.72 -1.6
879,859 - CCNA_00816 0.72 -1.4
879,877 + CCNA_00816 0.81 -0.9
879,877 + CCNA_00816 0.81 +0.4
879,877 + CCNA_00816 0.81 -2.5
879,885 - CCNA_00816 0.85 -0.9
879,885 - CCNA_00816 0.85 -0.0
879,887 + CCNA_00816 0.86 -0.2
879,890 - CCNA_00816 0.88 -1.8
879,904 - -1.3
879,916 - -3.0
879,942 + -1.9
879,948 + +0.5
880,022 + -0.3
880,049 + -1.5
880,049 + -0.2
880,049 + +0.9
880,049 + -0.1
880,049 + -0.1
880,057 - -1.7
880,057 - +0.8
880,057 - -0.4
880,057 - +0.1
880,057 - -0.4
880,057 - -1.4
880,057 - -0.2
880,064 - -0.6
880,093 + CCNA_00817 0.10 +0.3
880,133 + CCNA_00817 0.13 -0.8
880,136 - CCNA_00817 0.14 -0.4
880,138 - CCNA_00817 0.14 +1.6
880,141 - CCNA_00817 0.14 +2.6
880,238 + CCNA_00817 0.21 +2.0
880,257 + CCNA_00817 0.23 +2.2
880,259 + CCNA_00817 0.23 +1.5
880,273 - CCNA_00817 0.24 +0.8
880,277 + CCNA_00817 0.24 -1.1
880,303 + CCNA_00817 0.26 +2.1
880,311 - CCNA_00817 0.27 -2.6
880,311 - CCNA_00817 0.27 -1.7
880,311 - CCNA_00817 0.27 +0.0
880,311 - CCNA_00817 0.27 -0.1
880,317 + CCNA_00817 0.27 -0.9
880,324 - CCNA_00817 0.28 -0.6
880,348 + CCNA_00817 0.29 +4.1
880,366 - CCNA_00817 0.31 -1.4
880,391 + CCNA_00817 0.33 +1.8
880,427 - CCNA_00817 0.35 +1.6
880,441 + CCNA_00817 0.36 +0.4
880,460 - CCNA_00817 0.38 -0.7
880,460 - CCNA_00817 0.38 -1.3
880,460 - CCNA_00817 0.38 -0.7
880,487 + CCNA_00817 0.40 -0.6
880,494 + CCNA_00817 0.40 -1.0
880,494 + CCNA_00817 0.40 +0.1
880,494 + CCNA_00817 0.40 +0.6
880,499 + CCNA_00817 0.41 -0.3
880,499 + CCNA_00817 0.41 +0.5
880,502 - CCNA_00817 0.41 -0.1
880,502 - CCNA_00817 0.41 -0.9
880,504 + CCNA_00817 0.41 +0.7
880,512 - CCNA_00817 0.42 +0.3
880,535 + CCNA_00817 0.44 -0.2
880,540 + CCNA_00817 0.44 -1.1
880,545 + CCNA_00817 0.44 -0.5
880,553 - CCNA_00817 0.45 -0.3
880,577 - CCNA_00817 0.47 -0.1
880,577 - CCNA_00817 0.47 +0.4
880,577 - CCNA_00817 0.47 +2.1
880,628 - CCNA_00817 0.51 +1.1
880,633 - CCNA_00817 0.51 -0.5
880,702 - CCNA_00817 0.56 +0.5
880,711 + CCNA_00817 0.57 +0.2
880,726 + CCNA_00817 0.58 -0.6
880,740 + CCNA_00817 0.59 -2.3
880,740 + CCNA_00817 0.59 -2.0
880,740 + CCNA_00817 0.59 -1.2
880,740 + CCNA_00817 0.59 +0.9
880,740 + CCNA_00817 0.59 -0.6
880,740 + CCNA_00817 0.59 -0.2
880,740 + CCNA_00817 0.59 -1.2
880,740 + CCNA_00817 0.59 -1.7
880,740 + CCNA_00817 0.59 -1.4
880,740 + CCNA_00817 0.59 -0.6
880,748 - CCNA_00817 0.60 +0.1
880,748 - CCNA_00817 0.60 -0.7
880,793 + CCNA_00817 0.63 +2.4
880,793 + CCNA_00817 0.63 +1.1
880,793 + CCNA_00817 0.63 -0.5
880,825 - CCNA_00817 0.65 +1.8
880,839 + CCNA_00817 0.66 -0.8
880,847 - CCNA_00817 0.67 -2.6
880,894 - CCNA_00817 0.71 -1.2
880,894 - CCNA_00817 0.71 -1.6
880,897 + CCNA_00817 0.71 -2.0
880,906 + CCNA_00817 0.71 -1.7
880,909 - CCNA_00817 0.72 +2.1

Or see this region's nucleotide sequence