Experiment: Carbenicillin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20895 and ABZR86_RS20900 are separated by 76 nucleotides ABZR86_RS20900 and ABZR86_RS20905 are separated by 76 nucleotides ABZR86_RS20905 and ABZR86_RS20910 overlap by 4 nucleotides
ABZR86_RS20895: ABZR86_RS20895 - hypothetical protein, at 148,835 to 149,572
_RS20895
ABZR86_RS20900: ABZR86_RS20900 - transporter, at 149,649 to 150,485
_RS20900
ABZR86_RS20905: ABZR86_RS20905 - nuclear transport factor 2 family protein, at 150,562 to 151,263
_RS20905
ABZR86_RS20910: ABZR86_RS20910 - AraC family transcriptional regulator, at 151,260 to 151,934
_RS20910
Position (kb) 150
151
152 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 149.584 kb on - strand at 149.760 kb on + strand, within ABZR86_RS20900 at 149.761 kb on - strand, within ABZR86_RS20900 at 149.761 kb on - strand, within ABZR86_RS20900 at 149.761 kb on - strand, within ABZR86_RS20900 at 149.775 kb on + strand, within ABZR86_RS20900 at 149.775 kb on + strand, within ABZR86_RS20900 at 149.775 kb on + strand, within ABZR86_RS20900 at 149.776 kb on - strand, within ABZR86_RS20900 at 149.865 kb on + strand, within ABZR86_RS20900 at 149.866 kb on - strand, within ABZR86_RS20900 at 149.867 kb on + strand, within ABZR86_RS20900 at 150.040 kb on - strand, within ABZR86_RS20900 at 150.048 kb on + strand, within ABZR86_RS20900 at 150.148 kb on - strand, within ABZR86_RS20900 at 150.168 kb on + strand, within ABZR86_RS20900 at 150.168 kb on + strand, within ABZR86_RS20900 at 150.169 kb on - strand, within ABZR86_RS20900 at 150.169 kb on - strand, within ABZR86_RS20900 at 150.169 kb on - strand, within ABZR86_RS20900 at 150.211 kb on - strand, within ABZR86_RS20900 at 150.234 kb on + strand, within ABZR86_RS20900 at 150.315 kb on + strand, within ABZR86_RS20900 at 150.315 kb on + strand, within ABZR86_RS20900 at 150.316 kb on - strand, within ABZR86_RS20900 at 150.316 kb on - strand, within ABZR86_RS20900 at 150.316 kb on - strand, within ABZR86_RS20900 at 150.316 kb on - strand, within ABZR86_RS20900 at 150.316 kb on - strand, within ABZR86_RS20900 at 150.376 kb on - strand, within ABZR86_RS20900 at 150.382 kb on - strand, within ABZR86_RS20900 at 150.414 kb on + strand at 150.415 kb on - strand at 150.415 kb on - strand at 150.415 kb on - strand at 150.415 kb on - strand at 150.474 kb on + strand at 150.474 kb on + strand at 150.768 kb on - strand, within ABZR86_RS20905 at 150.803 kb on + strand, within ABZR86_RS20905 at 150.803 kb on + strand, within ABZR86_RS20905 at 150.860 kb on + strand, within ABZR86_RS20905 at 150.861 kb on - strand, within ABZR86_RS20905 at 150.924 kb on - strand, within ABZR86_RS20905 at 150.924 kb on - strand, within ABZR86_RS20905 at 150.924 kb on - strand, within ABZR86_RS20905 at 151.112 kb on + strand, within ABZR86_RS20905 at 151.492 kb on + strand, within ABZR86_RS20910 at 151.493 kb on - strand, within ABZR86_RS20910 at 151.939 kb on + strand at 151.939 kb on + strand at 151.940 kb on - strand at 152.031 kb on - strand at 152.031 kb on - strand at 152.031 kb on - strand at 152.032 kb on + strand at 152.032 kb on + strand at 152.144 kb on + strand at 152.144 kb on + strand at 152.145 kb on - strand at 152.186 kb on + strand at 152.187 kb on - strand at 152.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml remove 149,584 - +1.0 149,760 + ABZR86_RS20900 0.13 -0.3 149,761 - ABZR86_RS20900 0.13 -0.4 149,761 - ABZR86_RS20900 0.13 +0.2 149,761 - ABZR86_RS20900 0.13 -0.4 149,775 + ABZR86_RS20900 0.15 +0.1 149,775 + ABZR86_RS20900 0.15 -0.3 149,775 + ABZR86_RS20900 0.15 -0.1 149,776 - ABZR86_RS20900 0.15 -0.8 149,865 + ABZR86_RS20900 0.26 +0.2 149,866 - ABZR86_RS20900 0.26 +0.1 149,867 + ABZR86_RS20900 0.26 -0.2 150,040 - ABZR86_RS20900 0.47 -0.2 150,048 + ABZR86_RS20900 0.48 +0.4 150,148 - ABZR86_RS20900 0.60 +0.2 150,168 + ABZR86_RS20900 0.62 +0.2 150,168 + ABZR86_RS20900 0.62 -0.2 150,169 - ABZR86_RS20900 0.62 -0.2 150,169 - ABZR86_RS20900 0.62 -0.0 150,169 - ABZR86_RS20900 0.62 -0.3 150,211 - ABZR86_RS20900 0.67 -1.9 150,234 + ABZR86_RS20900 0.70 -0.3 150,315 + ABZR86_RS20900 0.80 -0.3 150,315 + ABZR86_RS20900 0.80 +0.5 150,316 - ABZR86_RS20900 0.80 -0.2 150,316 - ABZR86_RS20900 0.80 +0.7 150,316 - ABZR86_RS20900 0.80 +0.1 150,316 - ABZR86_RS20900 0.80 -0.5 150,316 - ABZR86_RS20900 0.80 -0.2 150,376 - ABZR86_RS20900 0.87 -0.5 150,382 - ABZR86_RS20900 0.88 +0.2 150,414 + +0.4 150,415 - +0.1 150,415 - -0.1 150,415 - +0.2 150,415 - -0.3 150,474 + +0.3 150,474 + -0.0 150,768 - ABZR86_RS20905 0.29 -0.5 150,803 + ABZR86_RS20905 0.34 +0.0 150,803 + ABZR86_RS20905 0.34 -1.0 150,860 + ABZR86_RS20905 0.42 +0.1 150,861 - ABZR86_RS20905 0.43 -0.0 150,924 - ABZR86_RS20905 0.52 -1.5 150,924 - ABZR86_RS20905 0.52 +0.3 150,924 - ABZR86_RS20905 0.52 -2.8 151,112 + ABZR86_RS20905 0.78 -1.1 151,492 + ABZR86_RS20910 0.34 +0.4 151,493 - ABZR86_RS20910 0.35 +0.1 151,939 + +0.1 151,939 + -0.0 151,940 - -0.2 152,031 - +0.1 152,031 - -1.1 152,031 - +0.7 152,032 + -0.3 152,032 + +0.1 152,144 + -0.4 152,144 + +0.1 152,145 - +0.1 152,186 + +0.0 152,187 - -0.1 152,193 - +0.7
Or see this region's nucleotide sequence