Experiment: Carbenicillin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20860 and ABZR86_RS20865 are separated by 181 nucleotides ABZR86_RS20865 and ABZR86_RS20870 are separated by 35 nucleotides ABZR86_RS20870 and ABZR86_RS20875 are separated by 38 nucleotides ABZR86_RS20875 and ABZR86_RS20880 overlap by 2 nucleotides
ABZR86_RS20860: ABZR86_RS20860 - transcriptional regulator GcvA, at 143,291 to 144,202
_RS20860
ABZR86_RS20865: ABZR86_RS20865 - SDR family oxidoreductase, at 144,384 to 145,157
_RS20865
ABZR86_RS20870: ABZR86_RS20870 - alcohol dehydrogenase catalytic domain-containing protein, at 145,193 to 146,230
_RS20870
ABZR86_RS20875: ABZR86_RS20875 - YciI family protein, at 146,269 to 146,835
_RS20875
ABZR86_RS20880: ABZR86_RS20880 - ester cyclase, at 146,834 to 147,382
_RS20880
Position (kb) 145
146
147 Strain fitness (log2 ratio) -2
-1
0
1 at 144.211 kb on - strand at 144.282 kb on + strand at 144.283 kb on - strand at 144.288 kb on + strand at 144.288 kb on + strand at 144.288 kb on + strand at 144.289 kb on - strand at 144.292 kb on + strand at 144.293 kb on - strand at 144.331 kb on - strand at 144.711 kb on + strand, within ABZR86_RS20865 at 144.711 kb on + strand, within ABZR86_RS20865 at 144.711 kb on + strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.712 kb on - strand, within ABZR86_RS20865 at 144.852 kb on + strand, within ABZR86_RS20865 at 144.852 kb on + strand, within ABZR86_RS20865 at 144.921 kb on - strand, within ABZR86_RS20865 at 144.966 kb on + strand, within ABZR86_RS20865 at 144.966 kb on + strand, within ABZR86_RS20865 at 144.967 kb on - strand, within ABZR86_RS20865 at 144.967 kb on - strand, within ABZR86_RS20865 at 145.205 kb on + strand at 145.310 kb on - strand, within ABZR86_RS20870 at 145.749 kb on - strand, within ABZR86_RS20870 at 145.835 kb on + strand, within ABZR86_RS20870 at 145.835 kb on + strand, within ABZR86_RS20870 at 145.835 kb on + strand, within ABZR86_RS20870 at 145.835 kb on + strand, within ABZR86_RS20870 at 145.836 kb on - strand, within ABZR86_RS20870 at 146.156 kb on + strand at 146.272 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml remove 144,211 - +0.2 144,282 + +0.1 144,283 - +0.3 144,288 + -0.0 144,288 + +0.3 144,288 + +0.4 144,289 - +0.9 144,292 + -0.7 144,293 - +0.4 144,331 - +0.2 144,711 + ABZR86_RS20865 0.42 -0.1 144,711 + ABZR86_RS20865 0.42 +0.3 144,711 + ABZR86_RS20865 0.42 +1.0 144,712 - ABZR86_RS20865 0.42 +0.4 144,712 - ABZR86_RS20865 0.42 -0.1 144,712 - ABZR86_RS20865 0.42 -0.2 144,712 - ABZR86_RS20865 0.42 -0.4 144,852 + ABZR86_RS20865 0.60 -0.6 144,852 + ABZR86_RS20865 0.60 -0.1 144,921 - ABZR86_RS20865 0.69 +0.1 144,966 + ABZR86_RS20865 0.75 +0.3 144,966 + ABZR86_RS20865 0.75 -0.3 144,967 - ABZR86_RS20865 0.75 -0.2 144,967 - ABZR86_RS20865 0.75 -0.0 145,205 + -0.6 145,310 - ABZR86_RS20870 0.11 +0.3 145,749 - ABZR86_RS20870 0.54 -0.0 145,835 + ABZR86_RS20870 0.62 +0.7 145,835 + ABZR86_RS20870 0.62 +0.6 145,835 + ABZR86_RS20870 0.62 -0.3 145,835 + ABZR86_RS20870 0.62 +1.0 145,836 - ABZR86_RS20870 0.62 -2.6 146,156 + +0.1 146,272 + -0.7
Or see this region's nucleotide sequence