Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS17425

Experiment: Carbenicillin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS17420 and ABZR86_RS17425 are separated by 456 nucleotidesABZR86_RS17425 and ABZR86_RS17430 are separated by 109 nucleotidesABZR86_RS17430 and ABZR86_RS17435 are separated by 4 nucleotidesABZR86_RS17435 and ABZR86_RS17440 are separated by 191 nucleotides ABZR86_RS17420: ABZR86_RS17420 - DUF192 domain-containing protein, at 3,934,458 to 3,934,907 _RS17420 ABZR86_RS17425: ABZR86_RS17425 - 16S ribosomal RNA, at 3,935,364 to 3,936,908 _RS17425 ABZR86_RS17430: ABZR86_RS17430 - tRNA-Ile, at 3,937,018 to 3,937,094 _RS17430 ABZR86_RS17435: ABZR86_RS17435 - tRNA-Ala, at 3,937,099 to 3,937,174 _RS17435 ABZR86_RS17440: ABZR86_RS17440 - 23S ribosomal RNA, at 3,937,366 to 3,940,244 _RS17440 Position (kb) 3935 3936 3937Strain fitness (log2 ratio) -1 0 1at 3934.552 kb on + strand, within ABZR86_RS17420at 3934.553 kb on - strand, within ABZR86_RS17420at 3934.576 kb on + strand, within ABZR86_RS17420at 3934.576 kb on + strand, within ABZR86_RS17420at 3934.577 kb on - strand, within ABZR86_RS17420at 3934.651 kb on + strand, within ABZR86_RS17420at 3934.651 kb on + strand, within ABZR86_RS17420at 3934.652 kb on - strand, within ABZR86_RS17420at 3934.652 kb on - strand, within ABZR86_RS17420at 3934.652 kb on - strand, within ABZR86_RS17420at 3934.652 kb on - strand, within ABZR86_RS17420at 3934.652 kb on - strand, within ABZR86_RS17420at 3934.652 kb on - strand, within ABZR86_RS17420at 3934.788 kb on - strand, within ABZR86_RS17420at 3934.788 kb on - strand, within ABZR86_RS17420at 3934.788 kb on - strand, within ABZR86_RS17420at 3934.890 kb on + strandat 3934.893 kb on + strandat 3934.893 kb on + strandat 3934.893 kb on + strandat 3934.893 kb on + strandat 3934.893 kb on + strandat 3934.893 kb on + strandat 3934.894 kb on - strandat 3934.894 kb on - strandat 3934.894 kb on - strandat 3934.894 kb on - strandat 3934.894 kb on - strandat 3934.894 kb on - strandat 3934.894 kb on - strandat 3934.911 kb on + strandat 3934.912 kb on - strandat 3934.927 kb on + strandat 3934.927 kb on + strandat 3934.927 kb on + strandat 3934.927 kb on + strandat 3934.927 kb on + strandat 3934.928 kb on - strandat 3934.928 kb on - strandat 3934.928 kb on - strandat 3934.928 kb on - strandat 3934.928 kb on - strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.929 kb on + strandat 3934.930 kb on - strandat 3934.930 kb on - strandat 3934.930 kb on - strandat 3934.930 kb on - strandat 3934.953 kb on + strandat 3934.953 kb on + strandat 3934.954 kb on - strandat 3934.954 kb on - strandat 3934.954 kb on - strandat 3934.954 kb on - strandat 3934.954 kb on - strandat 3935.025 kb on + strandat 3935.025 kb on + strandat 3935.026 kb on - strandat 3935.132 kb on - strandat 3935.612 kb on + strand, within ABZR86_RS17425at 3936.012 kb on - strand, within ABZR86_RS17425at 3936.165 kb on - strand, within ABZR86_RS17425at 3937.363 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml
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3,934,552 + ABZR86_RS17420 0.21 -0.3
3,934,553 - ABZR86_RS17420 0.21 -0.2
3,934,576 + ABZR86_RS17420 0.26 -0.0
3,934,576 + ABZR86_RS17420 0.26 +1.0
3,934,577 - ABZR86_RS17420 0.26 -0.2
3,934,651 + ABZR86_RS17420 0.43 +0.3
3,934,651 + ABZR86_RS17420 0.43 -0.4
3,934,652 - ABZR86_RS17420 0.43 -0.2
3,934,652 - ABZR86_RS17420 0.43 -0.8
3,934,652 - ABZR86_RS17420 0.43 -0.0
3,934,652 - ABZR86_RS17420 0.43 -1.0
3,934,652 - ABZR86_RS17420 0.43 +0.2
3,934,652 - ABZR86_RS17420 0.43 -0.8
3,934,788 - ABZR86_RS17420 0.73 -0.3
3,934,788 - ABZR86_RS17420 0.73 -0.2
3,934,788 - ABZR86_RS17420 0.73 +0.9
3,934,890 + +0.1
3,934,893 + +0.3
3,934,893 + -0.6
3,934,893 + -0.1
3,934,893 + +0.4
3,934,893 + +0.2
3,934,893 + -0.1
3,934,894 - +0.0
3,934,894 - -0.1
3,934,894 - +0.8
3,934,894 - -0.5
3,934,894 - -0.4
3,934,894 - -0.4
3,934,894 - +0.9
3,934,911 + -0.9
3,934,912 - +0.1
3,934,927 + +0.0
3,934,927 + +0.1
3,934,927 + +0.7
3,934,927 + -0.1
3,934,927 + +0.5
3,934,928 - +0.8
3,934,928 - +0.4
3,934,928 - +0.3
3,934,928 - -0.7
3,934,928 - -0.1
3,934,929 + +0.2
3,934,929 + -0.8
3,934,929 + -0.7
3,934,929 + -0.6
3,934,929 + -0.1
3,934,929 + +0.2
3,934,929 + -0.3
3,934,929 + +0.1
3,934,929 + +0.7
3,934,929 + -0.5
3,934,929 + +1.2
3,934,929 + +0.2
3,934,929 + -0.6
3,934,929 + -0.0
3,934,929 + -0.2
3,934,929 + -0.4
3,934,929 + -0.4
3,934,929 + +0.3
3,934,929 + +0.1
3,934,929 + -0.6
3,934,930 - -0.1
3,934,930 - -0.3
3,934,930 - -0.9
3,934,930 - +0.2
3,934,953 + -0.0
3,934,953 + +0.1
3,934,954 - -0.6
3,934,954 - -0.1
3,934,954 - +0.5
3,934,954 - -0.3
3,934,954 - +0.8
3,935,025 + +0.8
3,935,025 + -0.2
3,935,026 - +0.8
3,935,132 - +0.7
3,935,612 + ABZR86_RS17425 0.16 +0.1
3,936,012 - ABZR86_RS17425 0.42 -1.0
3,936,165 - ABZR86_RS17425 0.52 +1.2
3,937,363 + +0.1

Or see this region's nucleotide sequence