Experiment: Carbenicillin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS17420 and ABZR86_RS17425 are separated by 456 nucleotides ABZR86_RS17425 and ABZR86_RS17430 are separated by 109 nucleotides ABZR86_RS17430 and ABZR86_RS17435 are separated by 4 nucleotides ABZR86_RS17435 and ABZR86_RS17440 are separated by 191 nucleotides
ABZR86_RS17420: ABZR86_RS17420 - DUF192 domain-containing protein, at 3,934,458 to 3,934,907
_RS17420
ABZR86_RS17425: ABZR86_RS17425 - 16S ribosomal RNA, at 3,935,364 to 3,936,908
_RS17425
ABZR86_RS17430: ABZR86_RS17430 - tRNA-Ile, at 3,937,018 to 3,937,094
_RS17430
ABZR86_RS17435: ABZR86_RS17435 - tRNA-Ala, at 3,937,099 to 3,937,174
_RS17435
ABZR86_RS17440: ABZR86_RS17440 - 23S ribosomal RNA, at 3,937,366 to 3,940,244
_RS17440
Position (kb)
3935
3936
3937 Strain fitness (log2 ratio)
-1
0
1 at 3934.552 kb on + strand, within ABZR86_RS17420 at 3934.553 kb on - strand, within ABZR86_RS17420 at 3934.576 kb on + strand, within ABZR86_RS17420 at 3934.576 kb on + strand, within ABZR86_RS17420 at 3934.577 kb on - strand, within ABZR86_RS17420 at 3934.651 kb on + strand, within ABZR86_RS17420 at 3934.651 kb on + strand, within ABZR86_RS17420 at 3934.652 kb on - strand, within ABZR86_RS17420 at 3934.652 kb on - strand, within ABZR86_RS17420 at 3934.652 kb on - strand, within ABZR86_RS17420 at 3934.652 kb on - strand, within ABZR86_RS17420 at 3934.652 kb on - strand, within ABZR86_RS17420 at 3934.652 kb on - strand, within ABZR86_RS17420 at 3934.788 kb on - strand, within ABZR86_RS17420 at 3934.788 kb on - strand, within ABZR86_RS17420 at 3934.788 kb on - strand, within ABZR86_RS17420 at 3934.890 kb on + strand at 3934.893 kb on + strand at 3934.893 kb on + strand at 3934.893 kb on + strand at 3934.893 kb on + strand at 3934.893 kb on + strand at 3934.893 kb on + strand at 3934.894 kb on - strand at 3934.894 kb on - strand at 3934.894 kb on - strand at 3934.894 kb on - strand at 3934.894 kb on - strand at 3934.894 kb on - strand at 3934.894 kb on - strand at 3934.911 kb on + strand at 3934.912 kb on - strand at 3934.927 kb on + strand at 3934.927 kb on + strand at 3934.927 kb on + strand at 3934.927 kb on + strand at 3934.927 kb on + strand at 3934.928 kb on - strand at 3934.928 kb on - strand at 3934.928 kb on - strand at 3934.928 kb on - strand at 3934.928 kb on - strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.929 kb on + strand at 3934.930 kb on - strand at 3934.930 kb on - strand at 3934.930 kb on - strand at 3934.930 kb on - strand at 3934.953 kb on + strand at 3934.953 kb on + strand at 3934.954 kb on - strand at 3934.954 kb on - strand at 3934.954 kb on - strand at 3934.954 kb on - strand at 3934.954 kb on - strand at 3935.025 kb on + strand at 3935.025 kb on + strand at 3935.026 kb on - strand at 3935.132 kb on - strand at 3935.612 kb on + strand, within ABZR86_RS17425 at 3936.012 kb on - strand, within ABZR86_RS17425 at 3936.165 kb on - strand, within ABZR86_RS17425 at 3937.363 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml remove 3,934,552 + ABZR86_RS17420 0.21 -0.3 3,934,553 - ABZR86_RS17420 0.21 -0.2 3,934,576 + ABZR86_RS17420 0.26 -0.0 3,934,576 + ABZR86_RS17420 0.26 +1.0 3,934,577 - ABZR86_RS17420 0.26 -0.2 3,934,651 + ABZR86_RS17420 0.43 +0.3 3,934,651 + ABZR86_RS17420 0.43 -0.4 3,934,652 - ABZR86_RS17420 0.43 -0.2 3,934,652 - ABZR86_RS17420 0.43 -0.8 3,934,652 - ABZR86_RS17420 0.43 -0.0 3,934,652 - ABZR86_RS17420 0.43 -1.0 3,934,652 - ABZR86_RS17420 0.43 +0.2 3,934,652 - ABZR86_RS17420 0.43 -0.8 3,934,788 - ABZR86_RS17420 0.73 -0.3 3,934,788 - ABZR86_RS17420 0.73 -0.2 3,934,788 - ABZR86_RS17420 0.73 +0.9 3,934,890 + +0.1 3,934,893 + +0.3 3,934,893 + -0.6 3,934,893 + -0.1 3,934,893 + +0.4 3,934,893 + +0.2 3,934,893 + -0.1 3,934,894 - +0.0 3,934,894 - -0.1 3,934,894 - +0.8 3,934,894 - -0.5 3,934,894 - -0.4 3,934,894 - -0.4 3,934,894 - +0.9 3,934,911 + -0.9 3,934,912 - +0.1 3,934,927 + +0.0 3,934,927 + +0.1 3,934,927 + +0.7 3,934,927 + -0.1 3,934,927 + +0.5 3,934,928 - +0.8 3,934,928 - +0.4 3,934,928 - +0.3 3,934,928 - -0.7 3,934,928 - -0.1 3,934,929 + +0.2 3,934,929 + -0.8 3,934,929 + -0.7 3,934,929 + -0.6 3,934,929 + -0.1 3,934,929 + +0.2 3,934,929 + -0.3 3,934,929 + +0.1 3,934,929 + +0.7 3,934,929 + -0.5 3,934,929 + +1.2 3,934,929 + +0.2 3,934,929 + -0.6 3,934,929 + -0.0 3,934,929 + -0.2 3,934,929 + -0.4 3,934,929 + -0.4 3,934,929 + +0.3 3,934,929 + +0.1 3,934,929 + -0.6 3,934,930 - -0.1 3,934,930 - -0.3 3,934,930 - -0.9 3,934,930 - +0.2 3,934,953 + -0.0 3,934,953 + +0.1 3,934,954 - -0.6 3,934,954 - -0.1 3,934,954 - +0.5 3,934,954 - -0.3 3,934,954 - +0.8 3,935,025 + +0.8 3,935,025 + -0.2 3,935,026 - +0.8 3,935,132 - +0.7 3,935,612 + ABZR86_RS17425 0.16 +0.1 3,936,012 - ABZR86_RS17425 0.42 -1.0 3,936,165 - ABZR86_RS17425 0.52 +1.2 3,937,363 + +0.1
Or see this region's nucleotide sequence