Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS16760

Experiment: Carbenicillin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS16750 and ABZR86_RS16755 overlap by 4 nucleotidesABZR86_RS16755 and ABZR86_RS16760 are separated by 88 nucleotidesABZR86_RS16760 and ABZR86_RS16765 are separated by 120 nucleotidesABZR86_RS16765 and ABZR86_RS16770 overlap by 4 nucleotidesABZR86_RS16770 and ABZR86_RS16775 overlap by 8 nucleotides ABZR86_RS16750: ABZR86_RS16750 - hypothetical protein, at 3,780,544 to 3,780,936 _RS16750 ABZR86_RS16755: ABZR86_RS16755 - phage tail tube protein, at 3,780,933 to 3,781,841 _RS16755 ABZR86_RS16760: ABZR86_RS16760 - phage tail terminator-like protein, at 3,781,930 to 3,782,340 _RS16760 ABZR86_RS16765: ABZR86_RS16765 - lysozyme, at 3,782,461 to 3,782,934 _RS16765 ABZR86_RS16770: ABZR86_RS16770 - phage holin family protein, at 3,782,931 to 3,783,212 _RS16770 ABZR86_RS16775: ABZR86_RS16775 - putative holin, at 3,783,205 to 3,783,555 _RS16775 Position (kb) 3781 3782 3783Strain fitness (log2 ratio) -1 0 1at 3780.982 kb on + strandat 3781.078 kb on + strand, within ABZR86_RS16755at 3781.079 kb on - strand, within ABZR86_RS16755at 3781.079 kb on - strand, within ABZR86_RS16755at 3781.079 kb on - strand, within ABZR86_RS16755at 3781.165 kb on + strand, within ABZR86_RS16755at 3781.165 kb on + strand, within ABZR86_RS16755at 3781.166 kb on - strand, within ABZR86_RS16755at 3781.360 kb on + strand, within ABZR86_RS16755at 3781.360 kb on + strand, within ABZR86_RS16755at 3781.360 kb on + strand, within ABZR86_RS16755at 3781.360 kb on + strand, within ABZR86_RS16755at 3781.360 kb on + strand, within ABZR86_RS16755at 3781.360 kb on + strand, within ABZR86_RS16755at 3781.360 kb on + strand, within ABZR86_RS16755at 3781.360 kb on + strand, within ABZR86_RS16755at 3781.361 kb on - strand, within ABZR86_RS16755at 3781.361 kb on - strand, within ABZR86_RS16755at 3781.616 kb on - strand, within ABZR86_RS16755at 3781.616 kb on - strand, within ABZR86_RS16755at 3781.787 kb on - strandat 3781.787 kb on - strandat 3781.804 kb on + strandat 3781.805 kb on - strandat 3781.805 kb on - strandat 3781.805 kb on - strandat 3782.073 kb on - strand, within ABZR86_RS16760at 3782.439 kb on + strandat 3782.439 kb on + strandat 3782.439 kb on + strandat 3782.439 kb on + strandat 3782.814 kb on + strand, within ABZR86_RS16765at 3782.822 kb on + strand, within ABZR86_RS16765at 3782.855 kb on + strand, within ABZR86_RS16765at 3783.056 kb on + strand, within ABZR86_RS16770

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml
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3,780,982 + +0.0
3,781,078 + ABZR86_RS16755 0.16 +0.2
3,781,079 - ABZR86_RS16755 0.16 -0.4
3,781,079 - ABZR86_RS16755 0.16 +0.3
3,781,079 - ABZR86_RS16755 0.16 -0.2
3,781,165 + ABZR86_RS16755 0.26 +0.4
3,781,165 + ABZR86_RS16755 0.26 +0.1
3,781,166 - ABZR86_RS16755 0.26 -0.2
3,781,360 + ABZR86_RS16755 0.47 +0.0
3,781,360 + ABZR86_RS16755 0.47 +0.6
3,781,360 + ABZR86_RS16755 0.47 -1.1
3,781,360 + ABZR86_RS16755 0.47 -1.0
3,781,360 + ABZR86_RS16755 0.47 -0.0
3,781,360 + ABZR86_RS16755 0.47 -0.3
3,781,360 + ABZR86_RS16755 0.47 +0.3
3,781,360 + ABZR86_RS16755 0.47 -0.3
3,781,361 - ABZR86_RS16755 0.47 +0.9
3,781,361 - ABZR86_RS16755 0.47 -0.9
3,781,616 - ABZR86_RS16755 0.75 -0.0
3,781,616 - ABZR86_RS16755 0.75 +0.1
3,781,787 - -0.1
3,781,787 - -0.0
3,781,804 + +0.0
3,781,805 - +0.2
3,781,805 - -0.7
3,781,805 - -1.1
3,782,073 - ABZR86_RS16760 0.35 -1.0
3,782,439 + +0.4
3,782,439 + -0.1
3,782,439 + +0.0
3,782,439 + -0.3
3,782,814 + ABZR86_RS16765 0.74 -0.4
3,782,822 + ABZR86_RS16765 0.76 +0.1
3,782,855 + ABZR86_RS16765 0.83 -0.3
3,783,056 + ABZR86_RS16770 0.44 -1.2

Or see this region's nucleotide sequence