Experiment: Carbenicillin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS16750 and ABZR86_RS16755 overlap by 4 nucleotides ABZR86_RS16755 and ABZR86_RS16760 are separated by 88 nucleotides ABZR86_RS16760 and ABZR86_RS16765 are separated by 120 nucleotides ABZR86_RS16765 and ABZR86_RS16770 overlap by 4 nucleotides ABZR86_RS16770 and ABZR86_RS16775 overlap by 8 nucleotides
ABZR86_RS16750: ABZR86_RS16750 - hypothetical protein, at 3,780,544 to 3,780,936
_RS16750
ABZR86_RS16755: ABZR86_RS16755 - phage tail tube protein, at 3,780,933 to 3,781,841
_RS16755
ABZR86_RS16760: ABZR86_RS16760 - phage tail terminator-like protein, at 3,781,930 to 3,782,340
_RS16760
ABZR86_RS16765: ABZR86_RS16765 - lysozyme, at 3,782,461 to 3,782,934
_RS16765
ABZR86_RS16770: ABZR86_RS16770 - phage holin family protein, at 3,782,931 to 3,783,212
_RS16770
ABZR86_RS16775: ABZR86_RS16775 - putative holin, at 3,783,205 to 3,783,555
_RS16775
Position (kb)
3781
3782
3783 Strain fitness (log2 ratio)
-1
0
1 at 3780.982 kb on + strand at 3781.078 kb on + strand, within ABZR86_RS16755 at 3781.079 kb on - strand, within ABZR86_RS16755 at 3781.079 kb on - strand, within ABZR86_RS16755 at 3781.079 kb on - strand, within ABZR86_RS16755 at 3781.165 kb on + strand, within ABZR86_RS16755 at 3781.165 kb on + strand, within ABZR86_RS16755 at 3781.166 kb on - strand, within ABZR86_RS16755 at 3781.360 kb on + strand, within ABZR86_RS16755 at 3781.360 kb on + strand, within ABZR86_RS16755 at 3781.360 kb on + strand, within ABZR86_RS16755 at 3781.360 kb on + strand, within ABZR86_RS16755 at 3781.360 kb on + strand, within ABZR86_RS16755 at 3781.360 kb on + strand, within ABZR86_RS16755 at 3781.360 kb on + strand, within ABZR86_RS16755 at 3781.360 kb on + strand, within ABZR86_RS16755 at 3781.361 kb on - strand, within ABZR86_RS16755 at 3781.361 kb on - strand, within ABZR86_RS16755 at 3781.616 kb on - strand, within ABZR86_RS16755 at 3781.616 kb on - strand, within ABZR86_RS16755 at 3781.787 kb on - strand at 3781.787 kb on - strand at 3781.804 kb on + strand at 3781.805 kb on - strand at 3781.805 kb on - strand at 3781.805 kb on - strand at 3782.073 kb on - strand, within ABZR86_RS16760 at 3782.439 kb on + strand at 3782.439 kb on + strand at 3782.439 kb on + strand at 3782.439 kb on + strand at 3782.814 kb on + strand, within ABZR86_RS16765 at 3782.822 kb on + strand, within ABZR86_RS16765 at 3782.855 kb on + strand, within ABZR86_RS16765 at 3783.056 kb on + strand, within ABZR86_RS16770
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml remove 3,780,982 + +0.0 3,781,078 + ABZR86_RS16755 0.16 +0.2 3,781,079 - ABZR86_RS16755 0.16 -0.4 3,781,079 - ABZR86_RS16755 0.16 +0.3 3,781,079 - ABZR86_RS16755 0.16 -0.2 3,781,165 + ABZR86_RS16755 0.26 +0.4 3,781,165 + ABZR86_RS16755 0.26 +0.1 3,781,166 - ABZR86_RS16755 0.26 -0.2 3,781,360 + ABZR86_RS16755 0.47 +0.0 3,781,360 + ABZR86_RS16755 0.47 +0.6 3,781,360 + ABZR86_RS16755 0.47 -1.1 3,781,360 + ABZR86_RS16755 0.47 -1.0 3,781,360 + ABZR86_RS16755 0.47 -0.0 3,781,360 + ABZR86_RS16755 0.47 -0.3 3,781,360 + ABZR86_RS16755 0.47 +0.3 3,781,360 + ABZR86_RS16755 0.47 -0.3 3,781,361 - ABZR86_RS16755 0.47 +0.9 3,781,361 - ABZR86_RS16755 0.47 -0.9 3,781,616 - ABZR86_RS16755 0.75 -0.0 3,781,616 - ABZR86_RS16755 0.75 +0.1 3,781,787 - -0.1 3,781,787 - -0.0 3,781,804 + +0.0 3,781,805 - +0.2 3,781,805 - -0.7 3,781,805 - -1.1 3,782,073 - ABZR86_RS16760 0.35 -1.0 3,782,439 + +0.4 3,782,439 + -0.1 3,782,439 + +0.0 3,782,439 + -0.3 3,782,814 + ABZR86_RS16765 0.74 -0.4 3,782,822 + ABZR86_RS16765 0.76 +0.1 3,782,855 + ABZR86_RS16765 0.83 -0.3 3,783,056 + ABZR86_RS16770 0.44 -1.2
Or see this region's nucleotide sequence