Experiment: Carbenicillin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS14570 and ABZR86_RS14575 overlap by 16 nucleotides ABZR86_RS14575 and ABZR86_RS14580 are separated by 87 nucleotides ABZR86_RS14580 and ABZR86_RS14585 are separated by 176 nucleotides
ABZR86_RS14570: ABZR86_RS14570 - NAD(P)-dependent oxidoreductase, at 3,261,666 to 3,262,649
_RS14570
ABZR86_RS14575: ABZR86_RS14575 - helix-turn-helix domain-containing protein, at 3,262,634 to 3,263,443
_RS14575
ABZR86_RS14580: ABZR86_RS14580 - DUF3224 domain-containing protein, at 3,263,531 to 3,264,019
_RS14580
ABZR86_RS14585: ABZR86_RS14585 - YafY family protein, at 3,264,196 to 3,265,152
_RS14585
Position (kb)
3262
3263
3264 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3261.909 kb on - strand, within ABZR86_RS14570 at 3262.077 kb on + strand, within ABZR86_RS14570 at 3262.078 kb on - strand, within ABZR86_RS14570 at 3262.078 kb on - strand, within ABZR86_RS14570 at 3262.119 kb on + strand, within ABZR86_RS14570 at 3262.120 kb on - strand, within ABZR86_RS14570 at 3262.150 kb on + strand, within ABZR86_RS14570 at 3262.150 kb on + strand, within ABZR86_RS14570 at 3262.209 kb on + strand, within ABZR86_RS14570 at 3262.245 kb on + strand, within ABZR86_RS14570 at 3262.245 kb on + strand, within ABZR86_RS14570 at 3262.246 kb on - strand, within ABZR86_RS14570 at 3262.326 kb on + strand, within ABZR86_RS14570 at 3262.326 kb on + strand, within ABZR86_RS14570 at 3262.431 kb on + strand, within ABZR86_RS14570 at 3262.431 kb on + strand, within ABZR86_RS14570 at 3262.432 kb on - strand, within ABZR86_RS14570 at 3262.432 kb on - strand, within ABZR86_RS14570 at 3262.476 kb on + strand, within ABZR86_RS14570 at 3262.476 kb on + strand, within ABZR86_RS14570 at 3262.605 kb on + strand at 3262.606 kb on - strand at 3262.606 kb on - strand at 3262.725 kb on + strand, within ABZR86_RS14575 at 3262.839 kb on + strand, within ABZR86_RS14575 at 3262.839 kb on + strand, within ABZR86_RS14575 at 3262.840 kb on - strand, within ABZR86_RS14575 at 3262.840 kb on - strand, within ABZR86_RS14575 at 3262.840 kb on - strand, within ABZR86_RS14575 at 3263.130 kb on + strand, within ABZR86_RS14575 at 3263.223 kb on + strand, within ABZR86_RS14575 at 3263.224 kb on - strand, within ABZR86_RS14575 at 3263.224 kb on - strand, within ABZR86_RS14575 at 3263.224 kb on - strand, within ABZR86_RS14575 at 3263.224 kb on - strand, within ABZR86_RS14575 at 3263.224 kb on - strand, within ABZR86_RS14575 at 3263.224 kb on - strand, within ABZR86_RS14575 at 3263.224 kb on - strand, within ABZR86_RS14575 at 3263.412 kb on - strand at 3263.530 kb on + strand at 3263.530 kb on + strand at 3263.530 kb on + strand at 3263.530 kb on + strand at 3263.530 kb on + strand at 3263.530 kb on + strand at 3263.530 kb on + strand at 3263.531 kb on - strand at 3263.531 kb on - strand at 3263.531 kb on - strand at 3263.531 kb on - strand at 3263.531 kb on - strand at 3263.531 kb on - strand at 3263.531 kb on - strand at 3263.531 kb on - strand at 3263.531 kb on - strand at 3263.795 kb on + strand, within ABZR86_RS14580 at 3263.795 kb on + strand, within ABZR86_RS14580 at 3263.795 kb on + strand, within ABZR86_RS14580 at 3263.987 kb on + strand at 3263.987 kb on + strand at 3263.988 kb on - strand at 3263.988 kb on - strand at 3264.115 kb on + strand at 3264.115 kb on + strand at 3264.115 kb on + strand at 3264.116 kb on - strand at 3264.116 kb on - strand at 3264.199 kb on + strand at 3264.200 kb on - strand at 3264.313 kb on + strand, within ABZR86_RS14585 at 3264.313 kb on + strand, within ABZR86_RS14585 at 3264.377 kb on - strand, within ABZR86_RS14585
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml remove 3,261,909 - ABZR86_RS14570 0.25 -1.6 3,262,077 + ABZR86_RS14570 0.42 +0.6 3,262,078 - ABZR86_RS14570 0.42 -0.6 3,262,078 - ABZR86_RS14570 0.42 +0.6 3,262,119 + ABZR86_RS14570 0.46 -0.6 3,262,120 - ABZR86_RS14570 0.46 +0.5 3,262,150 + ABZR86_RS14570 0.49 -0.1 3,262,150 + ABZR86_RS14570 0.49 -1.2 3,262,209 + ABZR86_RS14570 0.55 -0.1 3,262,245 + ABZR86_RS14570 0.59 +0.4 3,262,245 + ABZR86_RS14570 0.59 -0.2 3,262,246 - ABZR86_RS14570 0.59 -1.2 3,262,326 + ABZR86_RS14570 0.67 -0.1 3,262,326 + ABZR86_RS14570 0.67 -0.2 3,262,431 + ABZR86_RS14570 0.78 -2.1 3,262,431 + ABZR86_RS14570 0.78 -0.6 3,262,432 - ABZR86_RS14570 0.78 -0.4 3,262,432 - ABZR86_RS14570 0.78 +0.1 3,262,476 + ABZR86_RS14570 0.82 -1.2 3,262,476 + ABZR86_RS14570 0.82 +0.2 3,262,605 + -0.1 3,262,606 - +0.2 3,262,606 - -0.9 3,262,725 + ABZR86_RS14575 0.11 -0.3 3,262,839 + ABZR86_RS14575 0.25 +0.0 3,262,839 + ABZR86_RS14575 0.25 -0.3 3,262,840 - ABZR86_RS14575 0.25 -1.0 3,262,840 - ABZR86_RS14575 0.25 -0.9 3,262,840 - ABZR86_RS14575 0.25 +0.7 3,263,130 + ABZR86_RS14575 0.61 +0.2 3,263,223 + ABZR86_RS14575 0.73 +0.3 3,263,224 - ABZR86_RS14575 0.73 +0.0 3,263,224 - ABZR86_RS14575 0.73 +0.7 3,263,224 - ABZR86_RS14575 0.73 +0.2 3,263,224 - ABZR86_RS14575 0.73 -0.1 3,263,224 - ABZR86_RS14575 0.73 +0.0 3,263,224 - ABZR86_RS14575 0.73 -0.8 3,263,224 - ABZR86_RS14575 0.73 +0.2 3,263,412 - +0.4 3,263,530 + +0.3 3,263,530 + -0.1 3,263,530 + +2.2 3,263,530 + -0.1 3,263,530 + -0.3 3,263,530 + -0.9 3,263,530 + -0.3 3,263,531 - +0.4 3,263,531 - -0.8 3,263,531 - +0.2 3,263,531 - -1.0 3,263,531 - +1.0 3,263,531 - -0.1 3,263,531 - -0.4 3,263,531 - +0.1 3,263,531 - -0.9 3,263,795 + ABZR86_RS14580 0.54 +1.0 3,263,795 + ABZR86_RS14580 0.54 -0.0 3,263,795 + ABZR86_RS14580 0.54 -0.6 3,263,987 + +0.1 3,263,987 + -0.7 3,263,988 - -0.4 3,263,988 - -1.8 3,264,115 + +0.1 3,264,115 + -0.9 3,264,115 + +0.0 3,264,116 - -0.6 3,264,116 - +0.1 3,264,199 + +0.2 3,264,200 - +0.4 3,264,313 + ABZR86_RS14585 0.12 -0.6 3,264,313 + ABZR86_RS14585 0.12 +0.3 3,264,377 - ABZR86_RS14585 0.19 -0.0
Or see this region's nucleotide sequence