Experiment: Carbenicillin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS13855 and ABZR86_RS13860 are separated by 236 nucleotides ABZR86_RS13860 and ABZR86_RS13865 are separated by 0 nucleotides ABZR86_RS13865 and ABZR86_RS13870 are separated by 136 nucleotides
ABZR86_RS13855: ABZR86_RS13855 - AMP-binding protein, at 3,087,144 to 3,088,508
_RS13855
ABZR86_RS13860: ABZR86_RS13860 - Sua5/YciO/YrdC/YwlC family protein, at 3,088,745 to 3,089,317
_RS13860
ABZR86_RS13865: ABZR86_RS13865 - DNA topoisomerase I, at 3,089,318 to 3,091,819
_RS13865
ABZR86_RS13870: ABZR86_RS13870 - DNA-processing protein DprA, at 3,091,956 to 3,093,086
_RS13870
Position (kb)
3089
3090
3091
3092 Strain fitness (log2 ratio)
-1
0
1 at 3088.363 kb on - strand, within ABZR86_RS13855 at 3088.486 kb on + strand at 3088.486 kb on + strand at 3088.487 kb on - strand at 3088.495 kb on + strand at 3088.495 kb on + strand at 3088.495 kb on + strand at 3088.496 kb on - strand at 3088.496 kb on - strand at 3088.496 kb on - strand at 3088.559 kb on + strand at 3088.560 kb on - strand at 3088.560 kb on - strand at 3088.576 kb on + strand at 3088.576 kb on + strand at 3088.576 kb on + strand at 3088.576 kb on + strand at 3088.576 kb on + strand at 3088.577 kb on - strand at 3088.577 kb on - strand at 3088.681 kb on + strand at 3088.681 kb on + strand at 3088.681 kb on + strand at 3088.682 kb on - strand at 3088.682 kb on - strand at 3088.682 kb on - strand at 3088.682 kb on - strand at 3089.626 kb on - strand, within ABZR86_RS13865 at 3091.871 kb on - strand at 3091.871 kb on - strand at 3091.871 kb on - strand at 3091.875 kb on - strand at 3091.875 kb on - strand at 3091.875 kb on - strand at 3091.875 kb on - strand at 3091.879 kb on - strand at 3091.928 kb on + strand at 3091.928 kb on + strand at 3091.928 kb on + strand at 3091.929 kb on - strand at 3091.929 kb on - strand at 3091.929 kb on - strand at 3091.929 kb on - strand at 3091.929 kb on - strand at 3091.975 kb on + strand at 3091.975 kb on + strand at 3091.975 kb on + strand at 3091.976 kb on - strand at 3091.976 kb on - strand at 3092.309 kb on + strand, within ABZR86_RS13870 at 3092.309 kb on + strand, within ABZR86_RS13870 at 3092.309 kb on + strand, within ABZR86_RS13870 at 3092.309 kb on + strand, within ABZR86_RS13870 at 3092.309 kb on + strand, within ABZR86_RS13870 at 3092.310 kb on - strand, within ABZR86_RS13870 at 3092.310 kb on - strand, within ABZR86_RS13870
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml remove 3,088,363 - ABZR86_RS13855 0.89 -0.1 3,088,486 + -0.4 3,088,486 + -0.3 3,088,487 - +0.2 3,088,495 + +0.6 3,088,495 + +0.0 3,088,495 + -0.2 3,088,496 - +0.1 3,088,496 - +0.1 3,088,496 - +0.1 3,088,559 + +1.0 3,088,560 - -1.1 3,088,560 - -0.2 3,088,576 + -0.0 3,088,576 + +0.3 3,088,576 + +1.2 3,088,576 + -0.8 3,088,576 + +0.2 3,088,577 - +0.1 3,088,577 - +0.3 3,088,681 + +0.2 3,088,681 + -0.4 3,088,681 + +0.2 3,088,682 - +0.1 3,088,682 - +0.0 3,088,682 - -0.2 3,088,682 - +0.1 3,089,626 - ABZR86_RS13865 0.12 -0.5 3,091,871 - +0.2 3,091,871 - +1.2 3,091,871 - +0.9 3,091,875 - +0.1 3,091,875 - +0.2 3,091,875 - +0.5 3,091,875 - +0.6 3,091,879 - +1.2 3,091,928 + +0.1 3,091,928 + +0.2 3,091,928 + +0.2 3,091,929 - +0.1 3,091,929 - -0.5 3,091,929 - -1.4 3,091,929 - -0.8 3,091,929 - -0.5 3,091,975 + +0.7 3,091,975 + -0.6 3,091,975 + +0.1 3,091,976 - +0.2 3,091,976 - -1.2 3,092,309 + ABZR86_RS13870 0.31 +0.1 3,092,309 + ABZR86_RS13870 0.31 +0.6 3,092,309 + ABZR86_RS13870 0.31 -0.1 3,092,309 + ABZR86_RS13870 0.31 +0.4 3,092,309 + ABZR86_RS13870 0.31 -0.3 3,092,310 - ABZR86_RS13870 0.31 +0.2 3,092,310 - ABZR86_RS13870 0.31 -0.4
Or see this region's nucleotide sequence