Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS13865

Experiment: Carbenicillin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS13855 and ABZR86_RS13860 are separated by 236 nucleotidesABZR86_RS13860 and ABZR86_RS13865 are separated by 0 nucleotidesABZR86_RS13865 and ABZR86_RS13870 are separated by 136 nucleotides ABZR86_RS13855: ABZR86_RS13855 - AMP-binding protein, at 3,087,144 to 3,088,508 _RS13855 ABZR86_RS13860: ABZR86_RS13860 - Sua5/YciO/YrdC/YwlC family protein, at 3,088,745 to 3,089,317 _RS13860 ABZR86_RS13865: ABZR86_RS13865 - DNA topoisomerase I, at 3,089,318 to 3,091,819 _RS13865 ABZR86_RS13870: ABZR86_RS13870 - DNA-processing protein DprA, at 3,091,956 to 3,093,086 _RS13870 Position (kb) 3089 3090 3091 3092Strain fitness (log2 ratio) -1 0 1at 3088.363 kb on - strand, within ABZR86_RS13855at 3088.486 kb on + strandat 3088.486 kb on + strandat 3088.487 kb on - strandat 3088.495 kb on + strandat 3088.495 kb on + strandat 3088.495 kb on + strandat 3088.496 kb on - strandat 3088.496 kb on - strandat 3088.496 kb on - strandat 3088.559 kb on + strandat 3088.560 kb on - strandat 3088.560 kb on - strandat 3088.576 kb on + strandat 3088.576 kb on + strandat 3088.576 kb on + strandat 3088.576 kb on + strandat 3088.576 kb on + strandat 3088.577 kb on - strandat 3088.577 kb on - strandat 3088.681 kb on + strandat 3088.681 kb on + strandat 3088.681 kb on + strandat 3088.682 kb on - strandat 3088.682 kb on - strandat 3088.682 kb on - strandat 3088.682 kb on - strandat 3089.626 kb on - strand, within ABZR86_RS13865at 3091.871 kb on - strandat 3091.871 kb on - strandat 3091.871 kb on - strandat 3091.875 kb on - strandat 3091.875 kb on - strandat 3091.875 kb on - strandat 3091.875 kb on - strandat 3091.879 kb on - strandat 3091.928 kb on + strandat 3091.928 kb on + strandat 3091.928 kb on + strandat 3091.929 kb on - strandat 3091.929 kb on - strandat 3091.929 kb on - strandat 3091.929 kb on - strandat 3091.929 kb on - strandat 3091.975 kb on + strandat 3091.975 kb on + strandat 3091.975 kb on + strandat 3091.976 kb on - strandat 3091.976 kb on - strandat 3092.309 kb on + strand, within ABZR86_RS13870at 3092.309 kb on + strand, within ABZR86_RS13870at 3092.309 kb on + strand, within ABZR86_RS13870at 3092.309 kb on + strand, within ABZR86_RS13870at 3092.309 kb on + strand, within ABZR86_RS13870at 3092.310 kb on - strand, within ABZR86_RS13870at 3092.310 kb on - strand, within ABZR86_RS13870

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml
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3,088,363 - ABZR86_RS13855 0.89 -0.1
3,088,486 + -0.4
3,088,486 + -0.3
3,088,487 - +0.2
3,088,495 + +0.6
3,088,495 + +0.0
3,088,495 + -0.2
3,088,496 - +0.1
3,088,496 - +0.1
3,088,496 - +0.1
3,088,559 + +1.0
3,088,560 - -1.1
3,088,560 - -0.2
3,088,576 + -0.0
3,088,576 + +0.3
3,088,576 + +1.2
3,088,576 + -0.8
3,088,576 + +0.2
3,088,577 - +0.1
3,088,577 - +0.3
3,088,681 + +0.2
3,088,681 + -0.4
3,088,681 + +0.2
3,088,682 - +0.1
3,088,682 - +0.0
3,088,682 - -0.2
3,088,682 - +0.1
3,089,626 - ABZR86_RS13865 0.12 -0.5
3,091,871 - +0.2
3,091,871 - +1.2
3,091,871 - +0.9
3,091,875 - +0.1
3,091,875 - +0.2
3,091,875 - +0.5
3,091,875 - +0.6
3,091,879 - +1.2
3,091,928 + +0.1
3,091,928 + +0.2
3,091,928 + +0.2
3,091,929 - +0.1
3,091,929 - -0.5
3,091,929 - -1.4
3,091,929 - -0.8
3,091,929 - -0.5
3,091,975 + +0.7
3,091,975 + -0.6
3,091,975 + +0.1
3,091,976 - +0.2
3,091,976 - -1.2
3,092,309 + ABZR86_RS13870 0.31 +0.1
3,092,309 + ABZR86_RS13870 0.31 +0.6
3,092,309 + ABZR86_RS13870 0.31 -0.1
3,092,309 + ABZR86_RS13870 0.31 +0.4
3,092,309 + ABZR86_RS13870 0.31 -0.3
3,092,310 - ABZR86_RS13870 0.31 +0.2
3,092,310 - ABZR86_RS13870 0.31 -0.4

Or see this region's nucleotide sequence