Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11710

Experiment: Carbenicillin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11705 and ABZR86_RS11710 are separated by 63 nucleotidesABZR86_RS11710 and ABZR86_RS11715 are separated by 12 nucleotides ABZR86_RS11705: ABZR86_RS11705 - PLP-dependent aminotransferase family protein, at 2,622,338 to 2,623,771 _RS11705 ABZR86_RS11710: ABZR86_RS11710 - ABC transporter permease, at 2,623,835 to 2,625,166 _RS11710 ABZR86_RS11715: ABZR86_RS11715 - FtsX-like permease family protein, at 2,625,179 to 2,626,342 _RS11715 Position (kb) 2623 2624 2625 2626Strain fitness (log2 ratio) -2 -1 0 1at 2622.905 kb on + strand, within ABZR86_RS11705at 2622.968 kb on + strand, within ABZR86_RS11705at 2622.981 kb on - strand, within ABZR86_RS11705at 2623.120 kb on - strand, within ABZR86_RS11705at 2623.193 kb on + strand, within ABZR86_RS11705at 2623.193 kb on + strand, within ABZR86_RS11705at 2623.193 kb on + strand, within ABZR86_RS11705at 2623.194 kb on - strand, within ABZR86_RS11705at 2623.194 kb on - strand, within ABZR86_RS11705at 2623.211 kb on + strand, within ABZR86_RS11705at 2623.268 kb on + strand, within ABZR86_RS11705at 2623.268 kb on + strand, within ABZR86_RS11705at 2623.268 kb on + strand, within ABZR86_RS11705at 2623.365 kb on - strand, within ABZR86_RS11705at 2623.365 kb on - strand, within ABZR86_RS11705at 2623.365 kb on - strand, within ABZR86_RS11705at 2623.637 kb on + strandat 2623.637 kb on + strandat 2623.637 kb on + strandat 2623.638 kb on - strandat 2623.655 kb on + strandat 2624.280 kb on + strand, within ABZR86_RS11710at 2624.294 kb on - strand, within ABZR86_RS11710at 2624.411 kb on - strand, within ABZR86_RS11710at 2625.393 kb on - strand, within ABZR86_RS11715at 2625.711 kb on + strand, within ABZR86_RS11715at 2625.711 kb on + strand, within ABZR86_RS11715at 2625.712 kb on - strand, within ABZR86_RS11715at 2625.712 kb on - strand, within ABZR86_RS11715at 2625.712 kb on - strand, within ABZR86_RS11715at 2625.712 kb on - strand, within ABZR86_RS11715at 2625.735 kb on + strand, within ABZR86_RS11715at 2625.736 kb on - strand, within ABZR86_RS11715at 2625.787 kb on - strand, within ABZR86_RS11715at 2626.014 kb on + strand, within ABZR86_RS11715at 2626.014 kb on + strand, within ABZR86_RS11715at 2626.015 kb on - strand, within ABZR86_RS11715at 2626.087 kb on - strand, within ABZR86_RS11715

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml
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2,622,905 + ABZR86_RS11705 0.40 -0.2
2,622,968 + ABZR86_RS11705 0.44 +0.5
2,622,981 - ABZR86_RS11705 0.45 +0.3
2,623,120 - ABZR86_RS11705 0.55 -0.5
2,623,193 + ABZR86_RS11705 0.60 +0.4
2,623,193 + ABZR86_RS11705 0.60 +0.1
2,623,193 + ABZR86_RS11705 0.60 +0.4
2,623,194 - ABZR86_RS11705 0.60 -1.0
2,623,194 - ABZR86_RS11705 0.60 +0.5
2,623,211 + ABZR86_RS11705 0.61 -0.2
2,623,268 + ABZR86_RS11705 0.65 -0.1
2,623,268 + ABZR86_RS11705 0.65 -0.2
2,623,268 + ABZR86_RS11705 0.65 -0.2
2,623,365 - ABZR86_RS11705 0.72 +0.5
2,623,365 - ABZR86_RS11705 0.72 +0.1
2,623,365 - ABZR86_RS11705 0.72 -0.0
2,623,637 + -0.7
2,623,637 + -0.5
2,623,637 + -2.4
2,623,638 - -0.7
2,623,655 + -0.2
2,624,280 + ABZR86_RS11710 0.33 -0.7
2,624,294 - ABZR86_RS11710 0.34 +0.0
2,624,411 - ABZR86_RS11710 0.43 -0.8
2,625,393 - ABZR86_RS11715 0.18 +0.4
2,625,711 + ABZR86_RS11715 0.46 -0.1
2,625,711 + ABZR86_RS11715 0.46 -0.1
2,625,712 - ABZR86_RS11715 0.46 -0.1
2,625,712 - ABZR86_RS11715 0.46 +0.5
2,625,712 - ABZR86_RS11715 0.46 -0.9
2,625,712 - ABZR86_RS11715 0.46 -0.4
2,625,735 + ABZR86_RS11715 0.48 -0.1
2,625,736 - ABZR86_RS11715 0.48 -0.4
2,625,787 - ABZR86_RS11715 0.52 -0.5
2,626,014 + ABZR86_RS11715 0.72 +1.3
2,626,014 + ABZR86_RS11715 0.72 +0.2
2,626,015 - ABZR86_RS11715 0.72 -0.5
2,626,087 - ABZR86_RS11715 0.78 +0.1

Or see this region's nucleotide sequence