Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09360

Experiment: Carbenicillin 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09355 and ABZR86_RS09360 overlap by 4 nucleotidesABZR86_RS09360 and ABZR86_RS09365 are separated by 4 nucleotidesABZR86_RS09365 and ABZR86_RS09370 are separated by 35 nucleotides ABZR86_RS09355: ABZR86_RS09355 - sulfite reductase flavoprotein subunit alpha, at 2,083,758 to 2,085,362 _RS09355 ABZR86_RS09360: ABZR86_RS09360 - FAD:protein FMN transferase, at 2,085,359 to 2,086,315 _RS09360 ABZR86_RS09365: ABZR86_RS09365 - DUF4198 domain-containing protein, at 2,086,320 to 2,087,132 _RS09365 ABZR86_RS09370: ABZR86_RS09370 - DUF2271 domain-containing protein, at 2,087,168 to 2,087,683 _RS09370 Position (kb) 2085 2086 2087Strain fitness (log2 ratio) -1 0 1at 2084.873 kb on - strand, within ABZR86_RS09355at 2085.109 kb on + strand, within ABZR86_RS09355at 2085.110 kb on - strand, within ABZR86_RS09355at 2085.110 kb on - strand, within ABZR86_RS09355at 2085.110 kb on - strand, within ABZR86_RS09355at 2085.543 kb on - strand, within ABZR86_RS09360at 2085.684 kb on + strand, within ABZR86_RS09360at 2085.685 kb on - strand, within ABZR86_RS09360at 2085.862 kb on + strand, within ABZR86_RS09360at 2085.863 kb on - strand, within ABZR86_RS09360at 2085.863 kb on - strand, within ABZR86_RS09360at 2085.864 kb on + strand, within ABZR86_RS09360at 2085.864 kb on + strand, within ABZR86_RS09360at 2085.864 kb on + strand, within ABZR86_RS09360at 2085.865 kb on - strand, within ABZR86_RS09360at 2085.865 kb on - strand, within ABZR86_RS09360at 2086.032 kb on + strand, within ABZR86_RS09360at 2086.158 kb on + strand, within ABZR86_RS09360at 2086.159 kb on - strand, within ABZR86_RS09360at 2086.159 kb on - strand, within ABZR86_RS09360at 2086.420 kb on + strand, within ABZR86_RS09365at 2086.421 kb on - strand, within ABZR86_RS09365at 2086.421 kb on - strand, within ABZR86_RS09365at 2086.798 kb on + strand, within ABZR86_RS09365at 2086.798 kb on + strand, within ABZR86_RS09365at 2086.799 kb on - strand, within ABZR86_RS09365at 2086.837 kb on + strand, within ABZR86_RS09365at 2086.838 kb on - strand, within ABZR86_RS09365at 2086.838 kb on - strand, within ABZR86_RS09365at 2086.879 kb on + strand, within ABZR86_RS09365at 2086.879 kb on + strand, within ABZR86_RS09365at 2086.880 kb on - strand, within ABZR86_RS09365at 2086.880 kb on - strand, within ABZR86_RS09365at 2086.880 kb on - strand, within ABZR86_RS09365at 2087.313 kb on + strand, within ABZR86_RS09370at 2087.313 kb on + strand, within ABZR86_RS09370at 2087.313 kb on + strand, within ABZR86_RS09370at 2087.314 kb on - strand, within ABZR86_RS09370

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml
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2,084,873 - ABZR86_RS09355 0.69 +0.0
2,085,109 + ABZR86_RS09355 0.84 -1.6
2,085,110 - ABZR86_RS09355 0.84 +0.5
2,085,110 - ABZR86_RS09355 0.84 +0.3
2,085,110 - ABZR86_RS09355 0.84 +0.0
2,085,543 - ABZR86_RS09360 0.19 +0.4
2,085,684 + ABZR86_RS09360 0.34 -0.0
2,085,685 - ABZR86_RS09360 0.34 +0.4
2,085,862 + ABZR86_RS09360 0.53 -0.1
2,085,863 - ABZR86_RS09360 0.53 +0.2
2,085,863 - ABZR86_RS09360 0.53 +1.0
2,085,864 + ABZR86_RS09360 0.53 -0.9
2,085,864 + ABZR86_RS09360 0.53 -1.1
2,085,864 + ABZR86_RS09360 0.53 +0.2
2,085,865 - ABZR86_RS09360 0.53 +0.4
2,085,865 - ABZR86_RS09360 0.53 +0.8
2,086,032 + ABZR86_RS09360 0.70 +0.3
2,086,158 + ABZR86_RS09360 0.83 -0.3
2,086,159 - ABZR86_RS09360 0.84 +0.2
2,086,159 - ABZR86_RS09360 0.84 +0.4
2,086,420 + ABZR86_RS09365 0.12 -0.2
2,086,421 - ABZR86_RS09365 0.12 -0.1
2,086,421 - ABZR86_RS09365 0.12 +0.0
2,086,798 + ABZR86_RS09365 0.59 +0.5
2,086,798 + ABZR86_RS09365 0.59 +0.2
2,086,799 - ABZR86_RS09365 0.59 +0.1
2,086,837 + ABZR86_RS09365 0.64 +0.4
2,086,838 - ABZR86_RS09365 0.64 +0.2
2,086,838 - ABZR86_RS09365 0.64 +0.1
2,086,879 + ABZR86_RS09365 0.69 -0.0
2,086,879 + ABZR86_RS09365 0.69 +0.2
2,086,880 - ABZR86_RS09365 0.69 -0.2
2,086,880 - ABZR86_RS09365 0.69 +0.1
2,086,880 - ABZR86_RS09365 0.69 +0.9
2,087,313 + ABZR86_RS09370 0.28 +0.1
2,087,313 + ABZR86_RS09370 0.28 -0.1
2,087,313 + ABZR86_RS09370 0.28 -0.4
2,087,314 - ABZR86_RS09370 0.28 -1.6

Or see this region's nucleotide sequence