Experiment: Carbenicillin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02405 and ABZR86_RS02410 are separated by 126 nucleotides ABZR86_RS02410 and ABZR86_RS02415 overlap by 4 nucleotides ABZR86_RS02415 and ABZR86_RS02420 are separated by 150 nucleotides ABZR86_RS02420 and ABZR86_RS02425 overlap by 4 nucleotides
ABZR86_RS02405: ABZR86_RS02405 - hypothetical protein, at 501,403 to 501,654
_RS02405
ABZR86_RS02410: ABZR86_RS02410 - hypothetical protein, at 501,781 to 502,485
_RS02410
ABZR86_RS02415: ABZR86_RS02415 - hypothetical protein, at 502,482 to 502,844
_RS02415
ABZR86_RS02420: ABZR86_RS02420 - hypothetical protein, at 502,995 to 503,453
_RS02420
ABZR86_RS02425: ABZR86_RS02425 - MASE1 domain-containing protein, at 503,450 to 504,985
_RS02425
Position (kb) 502
503 Strain fitness (log2 ratio) -2
-1
0
1
2 at 501.485 kb on + strand, within ABZR86_RS02405 at 501.485 kb on + strand, within ABZR86_RS02405 at 501.486 kb on - strand, within ABZR86_RS02405 at 501.531 kb on + strand, within ABZR86_RS02405 at 501.531 kb on + strand, within ABZR86_RS02405 at 501.531 kb on + strand, within ABZR86_RS02405 at 501.532 kb on - strand, within ABZR86_RS02405 at 501.533 kb on + strand, within ABZR86_RS02405 at 501.533 kb on + strand, within ABZR86_RS02405 at 501.534 kb on - strand, within ABZR86_RS02405 at 501.534 kb on - strand, within ABZR86_RS02405 at 501.534 kb on - strand, within ABZR86_RS02405 at 501.534 kb on - strand, within ABZR86_RS02405 at 501.534 kb on - strand, within ABZR86_RS02405 at 501.534 kb on - strand, within ABZR86_RS02405 at 501.534 kb on - strand, within ABZR86_RS02405 at 501.630 kb on + strand at 501.631 kb on - strand at 501.723 kb on + strand at 501.723 kb on + strand at 501.724 kb on - strand at 501.724 kb on - strand at 501.724 kb on - strand at 501.724 kb on - strand at 501.767 kb on - strand at 501.767 kb on - strand at 501.767 kb on - strand at 501.899 kb on + strand, within ABZR86_RS02410 at 501.900 kb on - strand, within ABZR86_RS02410 at 501.900 kb on - strand, within ABZR86_RS02410 at 501.942 kb on - strand, within ABZR86_RS02410 at 501.942 kb on - strand, within ABZR86_RS02410 at 502.040 kb on + strand, within ABZR86_RS02410 at 502.041 kb on - strand, within ABZR86_RS02410 at 502.041 kb on - strand, within ABZR86_RS02410 at 502.189 kb on - strand, within ABZR86_RS02410 at 502.189 kb on - strand, within ABZR86_RS02410 at 502.189 kb on - strand, within ABZR86_RS02410 at 502.189 kb on - strand, within ABZR86_RS02410 at 502.229 kb on - strand, within ABZR86_RS02410 at 502.329 kb on + strand, within ABZR86_RS02410 at 502.330 kb on - strand, within ABZR86_RS02410 at 502.588 kb on + strand, within ABZR86_RS02415 at 502.609 kb on + strand, within ABZR86_RS02415 at 502.609 kb on + strand, within ABZR86_RS02415 at 502.923 kb on + strand at 502.958 kb on - strand at 502.958 kb on - strand at 502.958 kb on - strand at 502.958 kb on - strand at 502.958 kb on - strand at 502.958 kb on - strand at 502.958 kb on - strand at 502.989 kb on - strand at 502.989 kb on - strand at 503.054 kb on + strand, within ABZR86_RS02420 at 503.055 kb on - strand, within ABZR86_RS02420 at 503.055 kb on - strand, within ABZR86_RS02420 at 503.128 kb on - strand, within ABZR86_RS02420 at 503.140 kb on - strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.166 kb on + strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.167 kb on - strand, within ABZR86_RS02420 at 503.168 kb on + strand, within ABZR86_RS02420 at 503.214 kb on + strand, within ABZR86_RS02420 at 503.447 kb on + strand at 503.451 kb on + strand at 503.451 kb on + strand at 503.452 kb on - strand at 503.452 kb on - strand at 503.452 kb on - strand at 503.452 kb on - strand at 503.452 kb on - strand at 503.463 kb on - strand at 503.508 kb on + strand at 503.508 kb on + strand at 503.508 kb on + strand at 503.508 kb on + strand at 503.509 kb on - strand at 503.509 kb on - strand at 503.509 kb on - strand at 503.509 kb on - strand at 503.520 kb on + strand at 503.520 kb on + strand at 503.521 kb on - strand at 503.521 kb on - strand at 503.521 kb on - strand at 503.521 kb on - strand at 503.521 kb on - strand at 503.521 kb on - strand at 503.559 kb on + strand at 503.676 kb on + strand, within ABZR86_RS02425 at 503.677 kb on - strand, within ABZR86_RS02425 at 503.677 kb on - strand, within ABZR86_RS02425 at 503.677 kb on - strand, within ABZR86_RS02425 at 503.706 kb on + strand, within ABZR86_RS02425 at 503.716 kb on + strand, within ABZR86_RS02425 at 503.716 kb on + strand, within ABZR86_RS02425 at 503.716 kb on + strand, within ABZR86_RS02425 at 503.717 kb on - strand, within ABZR86_RS02425 at 503.718 kb on + strand, within ABZR86_RS02425 at 503.719 kb on - strand, within ABZR86_RS02425 at 503.719 kb on - strand, within ABZR86_RS02425 at 503.719 kb on - strand, within ABZR86_RS02425 at 503.728 kb on + strand, within ABZR86_RS02425 at 503.728 kb on + strand, within ABZR86_RS02425 at 503.728 kb on + strand, within ABZR86_RS02425 at 503.728 kb on + strand, within ABZR86_RS02425 at 503.728 kb on + strand, within ABZR86_RS02425 at 503.729 kb on - strand, within ABZR86_RS02425 at 503.729 kb on - strand, within ABZR86_RS02425 at 503.729 kb on - strand, within ABZR86_RS02425 at 503.729 kb on - strand, within ABZR86_RS02425 at 503.729 kb on - strand, within ABZR86_RS02425 at 503.778 kb on + strand, within ABZR86_RS02425 at 503.778 kb on + strand, within ABZR86_RS02425 at 503.778 kb on + strand, within ABZR86_RS02425 at 503.778 kb on + strand, within ABZR86_RS02425 at 503.779 kb on - strand, within ABZR86_RS02425 at 503.779 kb on - strand, within ABZR86_RS02425 at 503.779 kb on - strand, within ABZR86_RS02425 at 503.779 kb on - strand, within ABZR86_RS02425
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml remove 501,485 + ABZR86_RS02405 0.33 -0.7 501,485 + ABZR86_RS02405 0.33 -0.4 501,486 - ABZR86_RS02405 0.33 -0.6 501,531 + ABZR86_RS02405 0.51 -0.7 501,531 + ABZR86_RS02405 0.51 +1.1 501,531 + ABZR86_RS02405 0.51 +0.9 501,532 - ABZR86_RS02405 0.51 -0.0 501,533 + ABZR86_RS02405 0.52 +0.8 501,533 + ABZR86_RS02405 0.52 +0.1 501,534 - ABZR86_RS02405 0.52 +0.2 501,534 - ABZR86_RS02405 0.52 +0.3 501,534 - ABZR86_RS02405 0.52 +2.2 501,534 - ABZR86_RS02405 0.52 +0.5 501,534 - ABZR86_RS02405 0.52 -0.0 501,534 - ABZR86_RS02405 0.52 +0.7 501,534 - ABZR86_RS02405 0.52 +0.0 501,630 + +0.6 501,631 - +0.6 501,723 + +0.3 501,723 + +0.0 501,724 - -0.2 501,724 - +0.0 501,724 - +0.7 501,724 - -0.6 501,767 - -0.1 501,767 - +0.7 501,767 - -0.4 501,899 + ABZR86_RS02410 0.17 +0.3 501,900 - ABZR86_RS02410 0.17 -1.1 501,900 - ABZR86_RS02410 0.17 -0.9 501,942 - ABZR86_RS02410 0.23 -0.0 501,942 - ABZR86_RS02410 0.23 +0.1 502,040 + ABZR86_RS02410 0.37 -0.1 502,041 - ABZR86_RS02410 0.37 -0.7 502,041 - ABZR86_RS02410 0.37 -0.4 502,189 - ABZR86_RS02410 0.58 -0.1 502,189 - ABZR86_RS02410 0.58 +0.3 502,189 - ABZR86_RS02410 0.58 +0.0 502,189 - ABZR86_RS02410 0.58 -1.6 502,229 - ABZR86_RS02410 0.64 -0.8 502,329 + ABZR86_RS02410 0.78 -0.5 502,330 - ABZR86_RS02410 0.78 -0.5 502,588 + ABZR86_RS02415 0.29 -1.9 502,609 + ABZR86_RS02415 0.35 +0.1 502,609 + ABZR86_RS02415 0.35 -0.5 502,923 + -0.5 502,958 - +0.4 502,958 - -0.5 502,958 - -0.2 502,958 - -0.3 502,958 - -0.7 502,958 - -0.2 502,958 - -0.2 502,989 - -0.7 502,989 - -0.4 503,054 + ABZR86_RS02420 0.13 +0.3 503,055 - ABZR86_RS02420 0.13 -0.3 503,055 - ABZR86_RS02420 0.13 +0.5 503,128 - ABZR86_RS02420 0.29 +1.1 503,140 - ABZR86_RS02420 0.32 +0.2 503,166 + ABZR86_RS02420 0.37 +0.1 503,166 + ABZR86_RS02420 0.37 -0.3 503,166 + ABZR86_RS02420 0.37 +1.6 503,166 + ABZR86_RS02420 0.37 -0.0 503,166 + ABZR86_RS02420 0.37 +0.1 503,166 + ABZR86_RS02420 0.37 -0.6 503,166 + ABZR86_RS02420 0.37 +0.2 503,166 + ABZR86_RS02420 0.37 -0.9 503,166 + ABZR86_RS02420 0.37 -0.5 503,166 + ABZR86_RS02420 0.37 +0.0 503,166 + ABZR86_RS02420 0.37 +0.0 503,166 + ABZR86_RS02420 0.37 -0.4 503,166 + ABZR86_RS02420 0.37 -0.7 503,166 + ABZR86_RS02420 0.37 +0.1 503,166 + ABZR86_RS02420 0.37 -1.2 503,166 + ABZR86_RS02420 0.37 +0.2 503,166 + ABZR86_RS02420 0.37 +0.1 503,166 + ABZR86_RS02420 0.37 -0.7 503,166 + ABZR86_RS02420 0.37 -0.4 503,166 + ABZR86_RS02420 0.37 +0.8 503,166 + ABZR86_RS02420 0.37 +0.5 503,166 + ABZR86_RS02420 0.37 +0.4 503,166 + ABZR86_RS02420 0.37 -0.4 503,166 + ABZR86_RS02420 0.37 -0.2 503,166 + ABZR86_RS02420 0.37 +0.4 503,166 + ABZR86_RS02420 0.37 -0.1 503,167 - ABZR86_RS02420 0.37 +0.2 503,167 - ABZR86_RS02420 0.37 +0.8 503,167 - ABZR86_RS02420 0.37 +0.9 503,167 - ABZR86_RS02420 0.37 -0.5 503,167 - ABZR86_RS02420 0.37 -0.2 503,167 - ABZR86_RS02420 0.37 +0.2 503,167 - ABZR86_RS02420 0.37 +0.3 503,167 - ABZR86_RS02420 0.37 -0.3 503,167 - ABZR86_RS02420 0.37 +0.6 503,167 - ABZR86_RS02420 0.37 +0.2 503,167 - ABZR86_RS02420 0.37 +0.3 503,167 - ABZR86_RS02420 0.37 +0.3 503,167 - ABZR86_RS02420 0.37 -0.2 503,167 - ABZR86_RS02420 0.37 -0.7 503,167 - ABZR86_RS02420 0.37 +0.2 503,167 - ABZR86_RS02420 0.37 +0.3 503,167 - ABZR86_RS02420 0.37 -0.7 503,168 + ABZR86_RS02420 0.38 -0.2 503,214 + ABZR86_RS02420 0.48 -0.2 503,447 + +0.1 503,451 + -1.4 503,451 + +0.3 503,452 - -0.6 503,452 - +0.9 503,452 - -0.2 503,452 - +0.9 503,452 - -0.4 503,463 - +0.1 503,508 + -0.2 503,508 + -0.4 503,508 + -0.3 503,508 + -0.2 503,509 - +0.5 503,509 - -0.6 503,509 - -1.0 503,509 - -0.6 503,520 + -0.1 503,520 + -0.5 503,521 - +0.5 503,521 - +0.5 503,521 - -0.0 503,521 - +0.3 503,521 - +0.7 503,521 - -0.0 503,559 + +0.0 503,676 + ABZR86_RS02425 0.15 +0.5 503,677 - ABZR86_RS02425 0.15 -0.3 503,677 - ABZR86_RS02425 0.15 -0.6 503,677 - ABZR86_RS02425 0.15 +0.9 503,706 + ABZR86_RS02425 0.17 -0.1 503,716 + ABZR86_RS02425 0.17 +0.1 503,716 + ABZR86_RS02425 0.17 -0.2 503,716 + ABZR86_RS02425 0.17 -0.8 503,717 - ABZR86_RS02425 0.17 +0.3 503,718 + ABZR86_RS02425 0.17 +0.4 503,719 - ABZR86_RS02425 0.18 +0.1 503,719 - ABZR86_RS02425 0.18 +0.5 503,719 - ABZR86_RS02425 0.18 -1.6 503,728 + ABZR86_RS02425 0.18 -0.5 503,728 + ABZR86_RS02425 0.18 +0.4 503,728 + ABZR86_RS02425 0.18 +0.5 503,728 + ABZR86_RS02425 0.18 -0.0 503,728 + ABZR86_RS02425 0.18 +1.7 503,729 - ABZR86_RS02425 0.18 -0.1 503,729 - ABZR86_RS02425 0.18 +0.1 503,729 - ABZR86_RS02425 0.18 +0.4 503,729 - ABZR86_RS02425 0.18 +0.1 503,729 - ABZR86_RS02425 0.18 +0.7 503,778 + ABZR86_RS02425 0.21 +0.0 503,778 + ABZR86_RS02425 0.21 -0.0 503,778 + ABZR86_RS02425 0.21 +1.2 503,778 + ABZR86_RS02425 0.21 -0.2 503,779 - ABZR86_RS02425 0.21 -0.0 503,779 - ABZR86_RS02425 0.21 -0.1 503,779 - ABZR86_RS02425 0.21 +0.5 503,779 - ABZR86_RS02425 0.21 -0.3
Or see this region's nucleotide sequence