Experiment: Carbenicillin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01520 and ABZR86_RS01525 are separated by 166 nucleotides ABZR86_RS01525 and ABZR86_RS01530 overlap by 1 nucleotides ABZR86_RS01530 and ABZR86_RS01535 are separated by 187 nucleotides
ABZR86_RS01520: ABZR86_RS01520 - alpha-L-arabinofuranosidase C-terminal domain-containing protein, at 331,112 to 332,626
_RS01520
ABZR86_RS01525: ABZR86_RS01525 - ATP-binding protein, at 332,793 to 334,202
_RS01525
ABZR86_RS01530: ABZR86_RS01530 - response regulator transcription factor, at 334,202 to 334,867
_RS01530
ABZR86_RS01535: ABZR86_RS01535 - (2Fe-2S)-binding protein, at 335,055 to 335,606
_RS01535
Position (kb) 332
333
334
335 Strain fitness (log2 ratio) -1
0
1 at 331.862 kb on + strand, within ABZR86_RS01520 at 331.865 kb on + strand, within ABZR86_RS01520 at 331.865 kb on + strand, within ABZR86_RS01520 at 331.866 kb on - strand, within ABZR86_RS01520 at 331.866 kb on - strand, within ABZR86_RS01520 at 331.866 kb on - strand, within ABZR86_RS01520 at 331.866 kb on - strand, within ABZR86_RS01520 at 332.000 kb on + strand, within ABZR86_RS01520 at 332.000 kb on + strand, within ABZR86_RS01520 at 332.243 kb on + strand, within ABZR86_RS01520 at 332.244 kb on - strand, within ABZR86_RS01520 at 332.261 kb on + strand, within ABZR86_RS01520 at 332.262 kb on - strand, within ABZR86_RS01520 at 332.682 kb on + strand at 332.978 kb on - strand, within ABZR86_RS01525 at 333.594 kb on - strand, within ABZR86_RS01525 at 334.104 kb on + strand at 334.188 kb on + strand at 334.287 kb on + strand, within ABZR86_RS01530 at 334.287 kb on + strand, within ABZR86_RS01530 at 334.287 kb on + strand, within ABZR86_RS01530 at 334.287 kb on + strand, within ABZR86_RS01530 at 334.288 kb on - strand, within ABZR86_RS01530 at 334.288 kb on - strand, within ABZR86_RS01530 at 334.288 kb on - strand, within ABZR86_RS01530 at 334.288 kb on - strand, within ABZR86_RS01530 at 334.572 kb on + strand, within ABZR86_RS01530 at 334.656 kb on + strand, within ABZR86_RS01530 at 334.732 kb on - strand, within ABZR86_RS01530 at 334.732 kb on - strand, within ABZR86_RS01530 at 334.732 kb on - strand, within ABZR86_RS01530 at 334.858 kb on + strand at 334.859 kb on - strand at 334.912 kb on + strand at 334.912 kb on + strand at 334.913 kb on - strand at 334.913 kb on - strand at 334.937 kb on + strand at 334.937 kb on + strand at 334.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml remove 331,862 + ABZR86_RS01520 0.50 +1.0 331,865 + ABZR86_RS01520 0.50 +0.2 331,865 + ABZR86_RS01520 0.50 -0.4 331,866 - ABZR86_RS01520 0.50 +0.4 331,866 - ABZR86_RS01520 0.50 +0.1 331,866 - ABZR86_RS01520 0.50 +0.0 331,866 - ABZR86_RS01520 0.50 -0.8 332,000 + ABZR86_RS01520 0.59 +0.0 332,000 + ABZR86_RS01520 0.59 +0.3 332,243 + ABZR86_RS01520 0.75 +0.5 332,244 - ABZR86_RS01520 0.75 -1.2 332,261 + ABZR86_RS01520 0.76 -0.5 332,262 - ABZR86_RS01520 0.76 +0.2 332,682 + +0.3 332,978 - ABZR86_RS01525 0.13 +0.8 333,594 - ABZR86_RS01525 0.57 +1.1 334,104 + -0.4 334,188 + +0.2 334,287 + ABZR86_RS01530 0.13 -0.1 334,287 + ABZR86_RS01530 0.13 -0.6 334,287 + ABZR86_RS01530 0.13 -0.6 334,287 + ABZR86_RS01530 0.13 +0.7 334,288 - ABZR86_RS01530 0.13 +0.1 334,288 - ABZR86_RS01530 0.13 -0.6 334,288 - ABZR86_RS01530 0.13 -1.0 334,288 - ABZR86_RS01530 0.13 +0.1 334,572 + ABZR86_RS01530 0.56 +0.7 334,656 + ABZR86_RS01530 0.68 +0.2 334,732 - ABZR86_RS01530 0.80 +0.2 334,732 - ABZR86_RS01530 0.80 -0.1 334,732 - ABZR86_RS01530 0.80 -0.7 334,858 + -0.2 334,859 - -0.1 334,912 + -0.6 334,912 + -0.1 334,913 - -0.0 334,913 - +0.2 334,937 + -0.1 334,937 + +0.2 334,942 - -0.3
Or see this region's nucleotide sequence