Experiment: Carbenicillin 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01400 and ABZR86_RS01405 are separated by 87 nucleotides ABZR86_RS01405 and ABZR86_RS01410 overlap by 1 nucleotides ABZR86_RS01410 and ABZR86_RS01415 are separated by 365 nucleotides
ABZR86_RS01400: ABZR86_RS01400 - Lrp/AsnC family transcriptional regulator, at 301,352 to 301,825
_RS01400
ABZR86_RS01405: ABZR86_RS01405 - helix-turn-helix domain-containing protein, at 301,913 to 302,569
_RS01405
ABZR86_RS01410: ABZR86_RS01410 - hypothetical protein, at 302,569 to 303,219
_RS01410
ABZR86_RS01415: ABZR86_RS01415 - histidine kinase, at 303,585 to 304,829
_RS01415
Position (kb) 302
303
304 Strain fitness (log2 ratio) -1
0
1
2 at 301.682 kb on + strand, within ABZR86_RS01400 at 301.682 kb on + strand, within ABZR86_RS01400 at 301.682 kb on + strand, within ABZR86_RS01400 at 301.682 kb on + strand, within ABZR86_RS01400 at 301.683 kb on - strand, within ABZR86_RS01400 at 301.700 kb on + strand, within ABZR86_RS01400 at 301.700 kb on + strand, within ABZR86_RS01400 at 301.701 kb on - strand, within ABZR86_RS01400 at 301.792 kb on + strand at 301.792 kb on + strand at 301.824 kb on - strand at 301.824 kb on - strand at 301.824 kb on - strand at 301.824 kb on - strand at 301.824 kb on - strand at 301.877 kb on - strand at 301.924 kb on + strand at 301.924 kb on + strand at 301.949 kb on + strand at 301.949 kb on + strand at 301.949 kb on + strand at 301.950 kb on - strand at 302.028 kb on + strand, within ABZR86_RS01405 at 302.029 kb on - strand, within ABZR86_RS01405 at 302.048 kb on + strand, within ABZR86_RS01405 at 302.049 kb on - strand, within ABZR86_RS01405 at 302.049 kb on - strand, within ABZR86_RS01405 at 302.049 kb on - strand, within ABZR86_RS01405 at 302.049 kb on - strand, within ABZR86_RS01405 at 302.049 kb on - strand, within ABZR86_RS01405 at 302.049 kb on - strand, within ABZR86_RS01405 at 302.171 kb on - strand, within ABZR86_RS01405 at 302.171 kb on - strand, within ABZR86_RS01405 at 302.171 kb on - strand, within ABZR86_RS01405 at 302.319 kb on + strand, within ABZR86_RS01405 at 302.320 kb on - strand, within ABZR86_RS01405 at 302.320 kb on - strand, within ABZR86_RS01405 at 302.320 kb on - strand, within ABZR86_RS01405 at 302.354 kb on - strand, within ABZR86_RS01405 at 302.878 kb on + strand, within ABZR86_RS01410 at 302.879 kb on - strand, within ABZR86_RS01410 at 302.936 kb on + strand, within ABZR86_RS01410 at 302.936 kb on + strand, within ABZR86_RS01410 at 302.937 kb on - strand, within ABZR86_RS01410 at 303.038 kb on + strand, within ABZR86_RS01410 at 303.057 kb on + strand, within ABZR86_RS01410 at 303.057 kb on + strand, within ABZR86_RS01410 at 303.277 kb on + strand at 303.278 kb on - strand at 303.278 kb on - strand at 303.292 kb on + strand at 303.293 kb on - strand at 303.293 kb on - strand at 303.293 kb on - strand at 303.293 kb on - strand at 303.293 kb on - strand at 303.293 kb on - strand at 303.299 kb on - strand at 303.398 kb on + strand at 303.398 kb on + strand at 303.398 kb on + strand at 303.399 kb on - strand at 303.399 kb on - strand at 303.399 kb on - strand at 303.399 kb on - strand at 303.402 kb on + strand at 303.402 kb on + strand at 303.403 kb on - strand at 303.403 kb on - strand at 303.403 kb on - strand at 303.403 kb on - strand at 303.403 kb on - strand at 303.403 kb on - strand at 303.403 kb on - strand at 303.403 kb on - strand at 303.403 kb on - strand at 303.403 kb on - strand at 303.404 kb on + strand at 303.404 kb on + strand at 303.546 kb on + strand at 303.546 kb on + strand at 303.547 kb on - strand at 303.679 kb on - strand at 303.679 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml remove 301,682 + ABZR86_RS01400 0.70 +0.2 301,682 + ABZR86_RS01400 0.70 +0.1 301,682 + ABZR86_RS01400 0.70 -0.1 301,682 + ABZR86_RS01400 0.70 +0.7 301,683 - ABZR86_RS01400 0.70 +0.3 301,700 + ABZR86_RS01400 0.73 -0.9 301,700 + ABZR86_RS01400 0.73 +0.6 301,701 - ABZR86_RS01400 0.74 -0.2 301,792 + -0.2 301,792 + +0.5 301,824 - -0.3 301,824 - -0.1 301,824 - -0.2 301,824 - +0.8 301,824 - -0.0 301,877 - +0.2 301,924 + +1.0 301,924 + +0.0 301,949 + +0.6 301,949 + +0.1 301,949 + +0.4 301,950 - -0.1 302,028 + ABZR86_RS01405 0.18 +0.2 302,029 - ABZR86_RS01405 0.18 -0.3 302,048 + ABZR86_RS01405 0.21 -0.3 302,049 - ABZR86_RS01405 0.21 +0.2 302,049 - ABZR86_RS01405 0.21 -0.7 302,049 - ABZR86_RS01405 0.21 +0.4 302,049 - ABZR86_RS01405 0.21 +1.7 302,049 - ABZR86_RS01405 0.21 +1.0 302,049 - ABZR86_RS01405 0.21 +1.8 302,171 - ABZR86_RS01405 0.39 +1.0 302,171 - ABZR86_RS01405 0.39 -0.2 302,171 - ABZR86_RS01405 0.39 +1.3 302,319 + ABZR86_RS01405 0.62 -0.1 302,320 - ABZR86_RS01405 0.62 +0.2 302,320 - ABZR86_RS01405 0.62 -0.6 302,320 - ABZR86_RS01405 0.62 -0.1 302,354 - ABZR86_RS01405 0.67 +0.5 302,878 + ABZR86_RS01410 0.47 +0.5 302,879 - ABZR86_RS01410 0.48 +0.5 302,936 + ABZR86_RS01410 0.56 +1.7 302,936 + ABZR86_RS01410 0.56 +0.4 302,937 - ABZR86_RS01410 0.57 -0.1 303,038 + ABZR86_RS01410 0.72 +0.5 303,057 + ABZR86_RS01410 0.75 -0.0 303,057 + ABZR86_RS01410 0.75 -0.4 303,277 + -1.1 303,278 - -0.4 303,278 - -0.2 303,292 + +0.3 303,293 - +0.3 303,293 - +0.0 303,293 - -0.4 303,293 - +0.6 303,293 - +0.6 303,293 - -0.4 303,299 - -1.2 303,398 + -0.7 303,398 + -0.1 303,398 + -0.1 303,399 - -0.8 303,399 - -0.6 303,399 - -0.2 303,399 - +0.1 303,402 + +0.7 303,402 + -0.5 303,403 - +0.4 303,403 - +0.3 303,403 - +0.3 303,403 - -0.4 303,403 - +0.7 303,403 - -0.1 303,403 - -0.8 303,403 - +0.8 303,403 - +0.2 303,403 - +0.2 303,404 + +0.5 303,404 + -0.6 303,546 + +0.2 303,546 + -0.5 303,547 - -0.1 303,679 - -0.6 303,679 - -0.5
Or see this region's nucleotide sequence