Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01195

Experiment: Carbenicillin 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS01190 and ABZR86_RS01195 are separated by 186 nucleotidesABZR86_RS01195 and ABZR86_RS01200 are separated by 247 nucleotides ABZR86_RS01190: ABZR86_RS01190 - alginate lyase family protein, at 245,604 to 246,806 _RS01190 ABZR86_RS01195: ABZR86_RS01195 - RICIN domain-containing protein, at 246,993 to 248,540 _RS01195 ABZR86_RS01200: ABZR86_RS01200 - sugar porter family MFS transporter, at 248,788 to 250,179 _RS01200 Position (kb) 246 247 248 249Strain fitness (log2 ratio) -1 0 1at 246.072 kb on + strand, within ABZR86_RS01190at 246.072 kb on + strand, within ABZR86_RS01190at 246.072 kb on + strand, within ABZR86_RS01190at 246.073 kb on - strand, within ABZR86_RS01190at 246.174 kb on + strand, within ABZR86_RS01190at 246.174 kb on + strand, within ABZR86_RS01190at 246.228 kb on + strand, within ABZR86_RS01190at 246.229 kb on - strand, within ABZR86_RS01190at 246.254 kb on + strand, within ABZR86_RS01190at 246.255 kb on - strand, within ABZR86_RS01190at 246.303 kb on + strand, within ABZR86_RS01190at 246.321 kb on + strand, within ABZR86_RS01190at 246.321 kb on + strand, within ABZR86_RS01190at 246.498 kb on + strand, within ABZR86_RS01190at 246.531 kb on + strand, within ABZR86_RS01190at 246.543 kb on + strand, within ABZR86_RS01190at 246.567 kb on + strand, within ABZR86_RS01190at 246.577 kb on - strand, within ABZR86_RS01190at 246.577 kb on - strand, within ABZR86_RS01190at 246.629 kb on + strand, within ABZR86_RS01190at 246.629 kb on + strand, within ABZR86_RS01190at 246.629 kb on + strand, within ABZR86_RS01190at 246.630 kb on - strand, within ABZR86_RS01190at 246.654 kb on + strand, within ABZR86_RS01190at 246.654 kb on + strand, within ABZR86_RS01190at 246.654 kb on + strand, within ABZR86_RS01190at 246.655 kb on - strand, within ABZR86_RS01190at 246.655 kb on - strand, within ABZR86_RS01190at 246.655 kb on - strand, within ABZR86_RS01190at 246.664 kb on - strand, within ABZR86_RS01190at 246.795 kb on + strandat 246.890 kb on + strandat 246.891 kb on - strandat 246.896 kb on + strandat 246.904 kb on + strandat 246.905 kb on - strandat 246.905 kb on - strandat 246.981 kb on + strandat 246.981 kb on + strandat 246.982 kb on - strandat 246.982 kb on - strandat 247.038 kb on + strandat 247.038 kb on + strandat 247.039 kb on - strandat 247.120 kb on + strandat 247.121 kb on - strandat 247.208 kb on + strand, within ABZR86_RS01195at 247.209 kb on - strand, within ABZR86_RS01195at 247.453 kb on + strand, within ABZR86_RS01195at 247.477 kb on + strand, within ABZR86_RS01195at 247.477 kb on + strand, within ABZR86_RS01195at 247.477 kb on + strand, within ABZR86_RS01195at 247.478 kb on - strand, within ABZR86_RS01195at 247.537 kb on + strand, within ABZR86_RS01195at 247.538 kb on - strand, within ABZR86_RS01195at 247.538 kb on - strand, within ABZR86_RS01195at 247.538 kb on - strand, within ABZR86_RS01195at 247.549 kb on + strand, within ABZR86_RS01195at 247.549 kb on + strand, within ABZR86_RS01195at 247.549 kb on + strand, within ABZR86_RS01195at 247.550 kb on - strand, within ABZR86_RS01195at 247.594 kb on + strand, within ABZR86_RS01195at 247.595 kb on - strand, within ABZR86_RS01195at 247.676 kb on - strand, within ABZR86_RS01195at 247.676 kb on - strand, within ABZR86_RS01195at 247.676 kb on - strand, within ABZR86_RS01195at 247.885 kb on + strand, within ABZR86_RS01195at 247.885 kb on + strand, within ABZR86_RS01195at 247.885 kb on + strand, within ABZR86_RS01195at 247.886 kb on - strand, within ABZR86_RS01195at 247.886 kb on - strand, within ABZR86_RS01195at 247.886 kb on - strand, within ABZR86_RS01195at 247.908 kb on + strand, within ABZR86_RS01195at 247.987 kb on + strand, within ABZR86_RS01195at 247.987 kb on + strand, within ABZR86_RS01195at 247.987 kb on + strand, within ABZR86_RS01195at 247.988 kb on - strand, within ABZR86_RS01195at 248.170 kb on + strand, within ABZR86_RS01195at 248.171 kb on - strand, within ABZR86_RS01195at 248.171 kb on - strand, within ABZR86_RS01195at 248.171 kb on - strand, within ABZR86_RS01195at 248.203 kb on + strand, within ABZR86_RS01195at 248.203 kb on + strand, within ABZR86_RS01195at 248.204 kb on - strand, within ABZR86_RS01195at 248.263 kb on + strand, within ABZR86_RS01195at 248.263 kb on + strand, within ABZR86_RS01195at 248.263 kb on + strand, within ABZR86_RS01195at 248.264 kb on - strand, within ABZR86_RS01195at 248.389 kb on + strandat 248.389 kb on + strandat 248.389 kb on + strandat 248.508 kb on + strandat 248.622 kb on - strandat 248.630 kb on + strandat 248.630 kb on + strandat 248.645 kb on + strandat 248.645 kb on + strandat 248.646 kb on - strandat 249.131 kb on + strand, within ABZR86_RS01200at 249.132 kb on - strand, within ABZR86_RS01200at 249.132 kb on - strand, within ABZR86_RS01200at 249.132 kb on - strand, within ABZR86_RS01200at 249.215 kb on + strand, within ABZR86_RS01200at 249.357 kb on - strand, within ABZR86_RS01200at 249.359 kb on + strand, within ABZR86_RS01200at 249.360 kb on - strand, within ABZR86_RS01200at 249.360 kb on - strand, within ABZR86_RS01200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.04 mg/ml
remove
246,072 + ABZR86_RS01190 0.39 -0.6
246,072 + ABZR86_RS01190 0.39 +0.3
246,072 + ABZR86_RS01190 0.39 -0.2
246,073 - ABZR86_RS01190 0.39 +0.5
246,174 + ABZR86_RS01190 0.47 +0.1
246,174 + ABZR86_RS01190 0.47 +0.3
246,228 + ABZR86_RS01190 0.52 +0.2
246,229 - ABZR86_RS01190 0.52 -0.3
246,254 + ABZR86_RS01190 0.54 -0.7
246,255 - ABZR86_RS01190 0.54 -0.4
246,303 + ABZR86_RS01190 0.58 +0.0
246,321 + ABZR86_RS01190 0.60 -0.2
246,321 + ABZR86_RS01190 0.60 -0.2
246,498 + ABZR86_RS01190 0.74 +0.1
246,531 + ABZR86_RS01190 0.77 +0.2
246,543 + ABZR86_RS01190 0.78 +1.0
246,567 + ABZR86_RS01190 0.80 +0.4
246,577 - ABZR86_RS01190 0.81 +0.0
246,577 - ABZR86_RS01190 0.81 -1.2
246,629 + ABZR86_RS01190 0.85 +0.4
246,629 + ABZR86_RS01190 0.85 +0.3
246,629 + ABZR86_RS01190 0.85 -0.3
246,630 - ABZR86_RS01190 0.85 +0.7
246,654 + ABZR86_RS01190 0.87 -0.8
246,654 + ABZR86_RS01190 0.87 +0.5
246,654 + ABZR86_RS01190 0.87 +0.4
246,655 - ABZR86_RS01190 0.87 -0.2
246,655 - ABZR86_RS01190 0.87 -0.7
246,655 - ABZR86_RS01190 0.87 +0.4
246,664 - ABZR86_RS01190 0.88 +0.9
246,795 + +0.4
246,890 + -0.1
246,891 - +0.8
246,896 + -0.0
246,904 + -0.2
246,905 - -0.1
246,905 - +0.5
246,981 + -0.4
246,981 + -0.4
246,982 - +0.3
246,982 - +0.9
247,038 + +0.1
247,038 + -0.4
247,039 - -0.2
247,120 + -0.4
247,121 - -0.7
247,208 + ABZR86_RS01195 0.14 +0.3
247,209 - ABZR86_RS01195 0.14 -0.0
247,453 + ABZR86_RS01195 0.30 -1.5
247,477 + ABZR86_RS01195 0.31 +0.1
247,477 + ABZR86_RS01195 0.31 -0.4
247,477 + ABZR86_RS01195 0.31 -0.1
247,478 - ABZR86_RS01195 0.31 +0.3
247,537 + ABZR86_RS01195 0.35 +0.6
247,538 - ABZR86_RS01195 0.35 -0.2
247,538 - ABZR86_RS01195 0.35 +0.1
247,538 - ABZR86_RS01195 0.35 -1.0
247,549 + ABZR86_RS01195 0.36 +0.3
247,549 + ABZR86_RS01195 0.36 -0.0
247,549 + ABZR86_RS01195 0.36 +0.0
247,550 - ABZR86_RS01195 0.36 -0.2
247,594 + ABZR86_RS01195 0.39 +0.0
247,595 - ABZR86_RS01195 0.39 -0.6
247,676 - ABZR86_RS01195 0.44 -0.4
247,676 - ABZR86_RS01195 0.44 +0.2
247,676 - ABZR86_RS01195 0.44 -0.2
247,885 + ABZR86_RS01195 0.58 -0.2
247,885 + ABZR86_RS01195 0.58 +0.4
247,885 + ABZR86_RS01195 0.58 -0.9
247,886 - ABZR86_RS01195 0.58 +0.0
247,886 - ABZR86_RS01195 0.58 -0.4
247,886 - ABZR86_RS01195 0.58 -0.3
247,908 + ABZR86_RS01195 0.59 -0.3
247,987 + ABZR86_RS01195 0.64 +0.2
247,987 + ABZR86_RS01195 0.64 -0.1
247,987 + ABZR86_RS01195 0.64 +0.1
247,988 - ABZR86_RS01195 0.64 -0.5
248,170 + ABZR86_RS01195 0.76 +0.0
248,171 - ABZR86_RS01195 0.76 -0.4
248,171 - ABZR86_RS01195 0.76 +0.3
248,171 - ABZR86_RS01195 0.76 -0.1
248,203 + ABZR86_RS01195 0.78 +0.5
248,203 + ABZR86_RS01195 0.78 -0.3
248,204 - ABZR86_RS01195 0.78 -0.4
248,263 + ABZR86_RS01195 0.82 +1.0
248,263 + ABZR86_RS01195 0.82 -0.5
248,263 + ABZR86_RS01195 0.82 -0.7
248,264 - ABZR86_RS01195 0.82 -0.5
248,389 + -0.2
248,389 + -0.7
248,389 + -0.6
248,508 + -0.0
248,622 - +0.7
248,630 + -0.3
248,630 + -0.3
248,645 + +0.4
248,645 + +0.0
248,646 - -0.4
249,131 + ABZR86_RS01200 0.25 +0.3
249,132 - ABZR86_RS01200 0.25 +0.4
249,132 - ABZR86_RS01200 0.25 +0.0
249,132 - ABZR86_RS01200 0.25 +0.2
249,215 + ABZR86_RS01200 0.31 -0.6
249,357 - ABZR86_RS01200 0.41 +0.4
249,359 + ABZR86_RS01200 0.41 +0.4
249,360 - ABZR86_RS01200 0.41 -0.5
249,360 - ABZR86_RS01200 0.41 +1.2

Or see this region's nucleotide sequence