Experiment: Red Arabinan from sugar-beet (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0360 and BT0361 are separated by 34 nucleotides BT0361 and BT0362 are separated by 25 nucleotides
BT0360: BT0360 - putative arabinan endo-1,5-alpha-L-arabinosidase (NCBI ptt file), at 432,012 to 433,937
BT0360
BT0361: BT0361 - hypothetical protein (NCBI ptt file), at 433,972 to 435,777
BT0361
BT0362: BT0362 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 435,803 to 438,952
BT0362
Position (kb) 433
434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 432.973 kb on + strand, within BT0360 at 433.032 kb on - strand, within BT0360 at 433.138 kb on + strand, within BT0360 at 433.166 kb on + strand, within BT0360 at 433.171 kb on + strand, within BT0360 at 433.406 kb on - strand, within BT0360 at 433.409 kb on + strand, within BT0360 at 433.516 kb on + strand, within BT0360 at 433.517 kb on - strand, within BT0360 at 433.637 kb on - strand, within BT0360 at 433.821 kb on - strand at 433.842 kb on + strand at 433.915 kb on + strand at 434.159 kb on + strand, within BT0361 at 434.224 kb on + strand, within BT0361 at 434.322 kb on + strand, within BT0361 at 434.331 kb on - strand, within BT0361 at 434.357 kb on - strand, within BT0361 at 434.369 kb on + strand, within BT0361 at 434.406 kb on - strand, within BT0361 at 434.549 kb on + strand, within BT0361 at 434.580 kb on - strand, within BT0361 at 434.585 kb on - strand, within BT0361 at 434.696 kb on + strand, within BT0361 at 434.876 kb on + strand, within BT0361 at 434.876 kb on + strand, within BT0361 at 434.876 kb on + strand at 434.928 kb on + strand, within BT0361 at 434.929 kb on - strand, within BT0361 at 434.933 kb on + strand, within BT0361 at 434.933 kb on + strand, within BT0361 at 435.050 kb on + strand, within BT0361 at 435.078 kb on - strand, within BT0361 at 435.298 kb on + strand, within BT0361 at 435.384 kb on + strand, within BT0361 at 435.423 kb on + strand, within BT0361 at 435.445 kb on + strand, within BT0361 at 435.491 kb on + strand, within BT0361 at 435.556 kb on - strand, within BT0361 at 435.556 kb on - strand, within BT0361 at 435.758 kb on + strand at 435.758 kb on + strand at 435.860 kb on - strand at 435.861 kb on + strand at 435.952 kb on + strand at 436.053 kb on + strand at 436.545 kb on + strand, within BT0362 at 436.607 kb on - strand, within BT0362
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet (C) remove 432,973 + BT0360 0.50 -0.3 433,032 - BT0360 0.53 -1.8 433,138 + BT0360 0.58 +0.4 433,166 + BT0360 0.60 -3.2 433,171 + BT0360 0.60 -1.0 433,406 - BT0360 0.72 +1.4 433,409 + BT0360 0.73 -0.6 433,516 + BT0360 0.78 -0.3 433,517 - BT0360 0.78 -2.4 433,637 - BT0360 0.84 -0.8 433,821 - -0.6 433,842 + -2.3 433,915 + -1.3 434,159 + BT0361 0.10 -0.6 434,224 + BT0361 0.14 +1.0 434,322 + BT0361 0.19 +0.0 434,331 - BT0361 0.20 +0.0 434,357 - BT0361 0.21 +0.4 434,369 + BT0361 0.22 -1.3 434,406 - BT0361 0.24 -0.3 434,549 + BT0361 0.32 -2.4 434,580 - BT0361 0.34 -1.4 434,585 - BT0361 0.34 -0.8 434,696 + BT0361 0.40 -0.6 434,876 + BT0361 0.50 -1.6 434,876 + BT0361 0.50 -0.8 434,876 + +2.0 434,928 + BT0361 0.53 -1.3 434,929 - BT0361 0.53 -0.9 434,933 + BT0361 0.53 -1.2 434,933 + BT0361 0.53 +0.4 435,050 + BT0361 0.60 -1.7 435,078 - BT0361 0.61 +0.1 435,298 + BT0361 0.73 -1.0 435,384 + BT0361 0.78 -1.6 435,423 + BT0361 0.80 +0.4 435,445 + BT0361 0.82 -0.8 435,491 + BT0361 0.84 +0.0 435,556 - BT0361 0.88 -1.7 435,556 - BT0361 0.88 -3.1 435,758 + -0.3 435,758 + +2.0 435,860 - +0.2 435,861 + -0.3 435,952 + -2.2 436,053 + +0.4 436,545 + BT0362 0.24 +0.4 436,607 - BT0362 0.26 -0.8
Or see this region's nucleotide sequence