Experiment: Chlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0859 and Synpcc7942_0860 are separated by 10 nucleotides Synpcc7942_0860 and Synpcc7942_0861 are separated by 233 nucleotides
Synpcc7942_0859: Synpcc7942_0859 - CheA signal transduction histidine kinase, at 860,118 to 862,976
_0859
Synpcc7942_0860: Synpcc7942_0860 - CheW protein, at 862,987 to 863,946
_0860
Synpcc7942_0861: Synpcc7942_0861 - bifunctional sterol desaturase/short chain dehydrogenase, at 864,180 to 865,469
_0861
Position (kb) 862
863
864 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 862.138 kb on - strand, within Synpcc7942_0859 at 862.210 kb on + strand, within Synpcc7942_0859 at 862.264 kb on - strand, within Synpcc7942_0859 at 862.264 kb on - strand, within Synpcc7942_0859 at 862.341 kb on + strand, within Synpcc7942_0859 at 862.383 kb on + strand, within Synpcc7942_0859 at 862.401 kb on + strand, within Synpcc7942_0859 at 862.409 kb on - strand, within Synpcc7942_0859 at 862.410 kb on + strand, within Synpcc7942_0859 at 862.417 kb on - strand, within Synpcc7942_0859 at 862.468 kb on + strand, within Synpcc7942_0859 at 862.470 kb on + strand, within Synpcc7942_0859 at 862.470 kb on + strand, within Synpcc7942_0859 at 862.470 kb on + strand, within Synpcc7942_0859 at 862.470 kb on + strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.478 kb on - strand, within Synpcc7942_0859 at 862.780 kb on + strand at 862.834 kb on + strand at 862.847 kb on - strand at 862.853 kb on - strand at 862.858 kb on + strand at 862.858 kb on + strand at 862.969 kb on + strand at 862.978 kb on - strand at 862.994 kb on + strand at 862.994 kb on + strand at 863.081 kb on + strand at 863.138 kb on - strand, within Synpcc7942_0860 at 863.139 kb on - strand, within Synpcc7942_0860 at 863.149 kb on - strand, within Synpcc7942_0860 at 863.156 kb on + strand, within Synpcc7942_0860 at 863.156 kb on + strand, within Synpcc7942_0860 at 863.307 kb on + strand, within Synpcc7942_0860 at 863.411 kb on + strand, within Synpcc7942_0860 at 863.415 kb on + strand, within Synpcc7942_0860 at 863.416 kb on - strand, within Synpcc7942_0860 at 863.423 kb on - strand, within Synpcc7942_0860 at 863.423 kb on - strand, within Synpcc7942_0860 at 863.456 kb on + strand, within Synpcc7942_0860 at 863.499 kb on + strand, within Synpcc7942_0860 at 863.548 kb on - strand, within Synpcc7942_0860 at 863.560 kb on - strand, within Synpcc7942_0860 at 863.568 kb on + strand at 863.568 kb on + strand, within Synpcc7942_0860 at 863.629 kb on - strand, within Synpcc7942_0860 at 863.687 kb on + strand, within Synpcc7942_0860 at 863.713 kb on + strand, within Synpcc7942_0860 at 863.714 kb on + strand, within Synpcc7942_0860 at 863.731 kb on + strand, within Synpcc7942_0860 at 863.733 kb on - strand, within Synpcc7942_0860 at 863.739 kb on - strand, within Synpcc7942_0860 at 863.739 kb on - strand, within Synpcc7942_0860 at 863.801 kb on + strand, within Synpcc7942_0860 at 863.801 kb on + strand, within Synpcc7942_0860 at 863.809 kb on - strand, within Synpcc7942_0860 at 863.809 kb on - strand, within Synpcc7942_0860 at 863.809 kb on - strand, within Synpcc7942_0860 at 863.844 kb on - strand, within Synpcc7942_0860 at 863.844 kb on - strand, within Synpcc7942_0860 at 863.844 kb on - strand, within Synpcc7942_0860 at 863.854 kb on - strand at 863.926 kb on - strand at 863.951 kb on - strand at 864.047 kb on + strand at 864.092 kb on - strand at 864.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 10 mM remove 862,138 - Synpcc7942_0859 0.71 +0.5 862,210 + Synpcc7942_0859 0.73 -0.8 862,264 - Synpcc7942_0859 0.75 -0.8 862,264 - Synpcc7942_0859 0.75 +0.1 862,341 + Synpcc7942_0859 0.78 +0.5 862,383 + Synpcc7942_0859 0.79 +0.7 862,401 + Synpcc7942_0859 0.80 -0.6 862,409 - Synpcc7942_0859 0.80 -0.7 862,410 + Synpcc7942_0859 0.80 +0.4 862,417 - Synpcc7942_0859 0.80 +1.0 862,468 + Synpcc7942_0859 0.82 -1.0 862,470 + Synpcc7942_0859 0.82 +0.3 862,470 + Synpcc7942_0859 0.82 -0.6 862,470 + Synpcc7942_0859 0.82 -0.6 862,470 + Synpcc7942_0859 0.82 +1.2 862,478 - Synpcc7942_0859 0.83 -1.6 862,478 - Synpcc7942_0859 0.83 -0.0 862,478 - Synpcc7942_0859 0.83 +0.2 862,478 - Synpcc7942_0859 0.83 +0.7 862,478 - Synpcc7942_0859 0.83 +0.9 862,780 + -0.6 862,834 + -0.5 862,847 - -1.6 862,853 - +0.5 862,858 + -0.6 862,858 + +0.5 862,969 + +1.4 862,978 - +0.8 862,994 + -2.6 862,994 + +0.9 863,081 + -1.3 863,138 - Synpcc7942_0860 0.16 -1.6 863,139 - Synpcc7942_0860 0.16 +2.1 863,149 - Synpcc7942_0860 0.17 -0.3 863,156 + Synpcc7942_0860 0.18 +1.0 863,156 + Synpcc7942_0860 0.18 -1.6 863,307 + Synpcc7942_0860 0.33 +0.3 863,411 + Synpcc7942_0860 0.44 -2.8 863,415 + Synpcc7942_0860 0.45 +1.4 863,416 - Synpcc7942_0860 0.45 +0.7 863,423 - Synpcc7942_0860 0.45 +1.1 863,423 - Synpcc7942_0860 0.45 -1.9 863,456 + Synpcc7942_0860 0.49 -1.0 863,499 + Synpcc7942_0860 0.53 +1.1 863,548 - Synpcc7942_0860 0.58 +0.7 863,560 - Synpcc7942_0860 0.60 +0.3 863,568 + +0.4 863,568 + Synpcc7942_0860 0.61 +0.0 863,629 - Synpcc7942_0860 0.67 -1.0 863,687 + Synpcc7942_0860 0.73 +2.2 863,713 + Synpcc7942_0860 0.76 -1.6 863,714 + Synpcc7942_0860 0.76 -1.0 863,731 + Synpcc7942_0860 0.78 -1.0 863,733 - Synpcc7942_0860 0.78 -0.6 863,739 - Synpcc7942_0860 0.78 +0.9 863,739 - Synpcc7942_0860 0.78 -1.1 863,801 + Synpcc7942_0860 0.85 -1.2 863,801 + Synpcc7942_0860 0.85 +2.1 863,809 - Synpcc7942_0860 0.86 -4.4 863,809 - Synpcc7942_0860 0.86 -1.6 863,809 - Synpcc7942_0860 0.86 -1.3 863,844 - Synpcc7942_0860 0.89 -0.4 863,844 - Synpcc7942_0860 0.89 -0.1 863,844 - Synpcc7942_0860 0.89 +0.8 863,854 - -0.0 863,926 - +1.5 863,951 - -0.0 864,047 + +1.5 864,092 - +0.2 864,102 - +1.7
Or see this region's nucleotide sequence