Experiment: Chlorate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt phoA and gst1 are separated by 68 nucleotides gst1 and Synpcc7942_0789 are separated by 95 nucleotides Synpcc7942_0789 and rbp3 are separated by 114 nucleotides
Synpcc7942_0787: phoA - putative purple acid phosphatase, at 783,007 to 783,885
phoA
Synpcc7942_0788: gst1 - glutathione S-transferase, at 783,954 to 784,748
gst1
Synpcc7942_0789: Synpcc7942_0789 - hypothetical protein, at 784,844 to 785,167
_0789
Synpcc7942_0790: rbp3 - RNA-binding region RNP-1, at 785,282 to 785,710
rbp3
Position (kb) 783
784
785 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 782.979 kb on + strand at 782.997 kb on + strand at 782.997 kb on + strand at 782.997 kb on + strand at 782.997 kb on + strand at 783.005 kb on - strand at 783.005 kb on - strand at 783.005 kb on - strand at 783.005 kb on - strand at 783.022 kb on + strand at 783.042 kb on + strand at 783.042 kb on + strand at 783.042 kb on + strand at 783.078 kb on - strand at 783.082 kb on - strand at 783.091 kb on + strand at 783.097 kb on - strand, within phoA at 783.105 kb on - strand, within phoA at 783.134 kb on - strand, within phoA at 783.162 kb on + strand, within phoA at 783.178 kb on + strand, within phoA at 783.227 kb on + strand, within phoA at 783.267 kb on - strand, within phoA at 783.285 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.308 kb on + strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.315 kb on - strand, within phoA at 783.324 kb on + strand, within phoA at 783.349 kb on + strand at 783.357 kb on - strand, within phoA at 783.357 kb on - strand, within phoA at 783.388 kb on + strand, within phoA at 783.419 kb on - strand, within phoA at 783.428 kb on + strand at 783.466 kb on - strand, within phoA at 783.504 kb on + strand, within phoA at 783.523 kb on + strand at 783.523 kb on + strand, within phoA at 783.533 kb on + strand, within phoA at 783.533 kb on + strand, within phoA at 783.573 kb on - strand, within phoA at 783.607 kb on - strand, within phoA at 783.630 kb on + strand, within phoA at 783.638 kb on - strand, within phoA at 783.638 kb on - strand, within phoA at 783.638 kb on - strand, within phoA at 783.644 kb on + strand, within phoA at 783.644 kb on - strand, within phoA at 783.644 kb on - strand, within phoA at 783.652 kb on - strand, within phoA at 783.660 kb on - strand, within phoA at 783.685 kb on - strand, within phoA at 783.685 kb on - strand, within phoA at 783.709 kb on + strand, within phoA at 783.759 kb on + strand at 783.759 kb on + strand, within phoA at 783.767 kb on - strand, within phoA at 783.767 kb on - strand, within phoA at 783.777 kb on - strand at 783.784 kb on + strand, within phoA at 783.789 kb on + strand, within phoA at 783.792 kb on - strand, within phoA at 783.808 kb on + strand at 783.810 kb on + strand at 783.816 kb on - strand at 783.841 kb on + strand at 783.865 kb on - strand at 783.885 kb on + strand at 783.885 kb on + strand at 783.885 kb on + strand at 783.885 kb on + strand at 783.893 kb on - strand at 783.893 kb on - strand at 783.926 kb on - strand at 783.954 kb on - strand at 783.959 kb on - strand at 784.046 kb on + strand, within gst1 at 784.065 kb on - strand, within gst1 at 784.069 kb on + strand, within gst1 at 784.135 kb on + strand, within gst1 at 784.148 kb on + strand, within gst1 at 784.148 kb on + strand, within gst1 at 784.156 kb on - strand, within gst1 at 784.170 kb on + strand, within gst1 at 784.209 kb on + strand, within gst1 at 784.231 kb on - strand, within gst1 at 784.250 kb on + strand, within gst1 at 784.255 kb on + strand, within gst1 at 784.270 kb on + strand, within gst1 at 784.326 kb on + strand, within gst1 at 784.331 kb on + strand, within gst1 at 784.334 kb on - strand, within gst1 at 784.419 kb on + strand, within gst1 at 784.432 kb on - strand, within gst1 at 784.501 kb on - strand, within gst1 at 784.541 kb on + strand, within gst1 at 784.574 kb on - strand, within gst1 at 784.627 kb on - strand, within gst1 at 784.661 kb on - strand, within gst1 at 784.758 kb on + strand at 784.776 kb on - strand at 784.800 kb on - strand at 784.801 kb on + strand at 784.807 kb on + strand at 784.843 kb on - strand at 784.847 kb on - strand at 784.866 kb on - strand at 784.866 kb on - strand at 784.875 kb on + strand at 784.903 kb on + strand, within Synpcc7942_0789 at 784.909 kb on - strand, within Synpcc7942_0789 at 784.917 kb on - strand, within Synpcc7942_0789 at 784.957 kb on + strand, within Synpcc7942_0789 at 784.965 kb on - strand, within Synpcc7942_0789 at 784.965 kb on - strand, within Synpcc7942_0789 at 784.978 kb on - strand, within Synpcc7942_0789 at 784.991 kb on + strand, within Synpcc7942_0789 at 785.025 kb on - strand, within Synpcc7942_0789 at 785.032 kb on - strand, within Synpcc7942_0789 at 785.034 kb on + strand, within Synpcc7942_0789 at 785.034 kb on + strand, within Synpcc7942_0789 at 785.062 kb on - strand, within Synpcc7942_0789 at 785.081 kb on + strand, within Synpcc7942_0789 at 785.081 kb on + strand, within Synpcc7942_0789 at 785.144 kb on - strand at 785.148 kb on - strand at 785.152 kb on + strand at 785.152 kb on + strand at 785.158 kb on - strand at 785.165 kb on + strand at 785.166 kb on - strand at 785.264 kb on - strand at 785.264 kb on - strand at 785.264 kb on - strand at 785.291 kb on + strand at 785.378 kb on - strand, within rbp3 at 785.378 kb on - strand, within rbp3 at 785.501 kb on + strand, within rbp3 at 785.509 kb on - strand, within rbp3 at 785.563 kb on - strand, within rbp3 at 785.563 kb on - strand, within rbp3 at 785.580 kb on - strand, within rbp3 at 785.662 kb on - strand, within rbp3 at 785.665 kb on + strand, within rbp3 at 785.665 kb on + strand, within rbp3 at 785.665 kb on + strand, within rbp3 at 785.665 kb on + strand, within rbp3 at 785.673 kb on - strand at 785.673 kb on - strand at 785.673 kb on - strand at 785.673 kb on - strand at 785.720 kb on - strand at 785.738 kb on + strand at 785.746 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorate 10 mM remove 782,979 + +0.6 782,997 + -0.7 782,997 + -0.4 782,997 + -1.6 782,997 + +0.4 783,005 - -0.3 783,005 - +0.9 783,005 - +0.9 783,005 - +0.7 783,022 + +0.8 783,042 + +1.2 783,042 + +1.4 783,042 + +1.1 783,078 - +2.8 783,082 - -0.0 783,091 + -1.6 783,097 - phoA Synpcc7942_0787 0.10 +1.6 783,105 - phoA Synpcc7942_0787 0.11 -1.0 783,134 - phoA Synpcc7942_0787 0.14 +1.7 783,162 + phoA Synpcc7942_0787 0.18 +0.6 783,178 + phoA Synpcc7942_0787 0.19 -1.0 783,227 + phoA Synpcc7942_0787 0.25 +0.9 783,267 - phoA Synpcc7942_0787 0.30 -1.6 783,285 + phoA Synpcc7942_0787 0.32 +1.2 783,306 + phoA Synpcc7942_0787 0.34 -0.6 783,306 + phoA Synpcc7942_0787 0.34 -0.0 783,306 + phoA Synpcc7942_0787 0.34 +1.6 783,306 + phoA Synpcc7942_0787 0.34 -0.6 783,306 + phoA Synpcc7942_0787 0.34 +0.9 783,306 + phoA Synpcc7942_0787 0.34 +1.5 783,306 + phoA Synpcc7942_0787 0.34 +0.2 783,306 + phoA Synpcc7942_0787 0.34 +1.2 783,306 + phoA Synpcc7942_0787 0.34 +0.1 783,306 + phoA Synpcc7942_0787 0.34 +0.7 783,306 + phoA Synpcc7942_0787 0.34 -0.6 783,306 + phoA Synpcc7942_0787 0.34 +1.1 783,308 + phoA Synpcc7942_0787 0.34 -0.1 783,314 - phoA Synpcc7942_0787 0.35 +2.0 783,314 - phoA Synpcc7942_0787 0.35 -0.9 783,314 - phoA Synpcc7942_0787 0.35 +0.2 783,314 - phoA Synpcc7942_0787 0.35 +1.0 783,314 - phoA Synpcc7942_0787 0.35 +0.4 783,314 - phoA Synpcc7942_0787 0.35 -0.0 783,314 - phoA Synpcc7942_0787 0.35 -0.3 783,314 - phoA Synpcc7942_0787 0.35 +1.0 783,315 - phoA Synpcc7942_0787 0.35 +1.2 783,324 + phoA Synpcc7942_0787 0.36 -1.6 783,349 + -1.6 783,357 - phoA Synpcc7942_0787 0.40 -0.6 783,357 - phoA Synpcc7942_0787 0.40 +0.7 783,388 + phoA Synpcc7942_0787 0.43 +1.7 783,419 - phoA Synpcc7942_0787 0.47 +0.4 783,428 + -0.6 783,466 - phoA Synpcc7942_0787 0.52 +0.6 783,504 + phoA Synpcc7942_0787 0.57 +2.5 783,523 + -0.6 783,523 + phoA Synpcc7942_0787 0.59 +0.6 783,533 + phoA Synpcc7942_0787 0.60 -0.0 783,533 + phoA Synpcc7942_0787 0.60 -0.0 783,573 - phoA Synpcc7942_0787 0.64 -0.6 783,607 - phoA Synpcc7942_0787 0.68 -0.4 783,630 + phoA Synpcc7942_0787 0.71 +1.7 783,638 - phoA Synpcc7942_0787 0.72 +3.3 783,638 - phoA Synpcc7942_0787 0.72 +3.5 783,638 - phoA Synpcc7942_0787 0.72 +1.4 783,644 + phoA Synpcc7942_0787 0.72 +0.3 783,644 - phoA Synpcc7942_0787 0.72 +1.2 783,644 - phoA Synpcc7942_0787 0.72 +0.9 783,652 - phoA Synpcc7942_0787 0.73 -0.3 783,660 - phoA Synpcc7942_0787 0.74 -1.6 783,685 - phoA Synpcc7942_0787 0.77 +0.5 783,685 - phoA Synpcc7942_0787 0.77 -0.6 783,709 + phoA Synpcc7942_0787 0.80 +1.9 783,759 + -1.6 783,759 + phoA Synpcc7942_0787 0.86 +1.1 783,767 - phoA Synpcc7942_0787 0.86 -0.4 783,767 - phoA Synpcc7942_0787 0.86 +0.8 783,777 - -0.0 783,784 + phoA Synpcc7942_0787 0.88 +1.7 783,789 + phoA Synpcc7942_0787 0.89 -0.3 783,792 - phoA Synpcc7942_0787 0.89 -0.0 783,808 + +1.2 783,810 + -0.3 783,816 - -0.0 783,841 + +0.8 783,865 - +1.8 783,885 + +1.2 783,885 + -0.6 783,885 + -1.0 783,885 + +2.2 783,893 - +0.1 783,893 - +0.6 783,926 - +1.5 783,954 - +1.9 783,959 - +0.2 784,046 + gst1 Synpcc7942_0788 0.12 -3.6 784,065 - gst1 Synpcc7942_0788 0.14 -2.9 784,069 + gst1 Synpcc7942_0788 0.14 -4.2 784,135 + gst1 Synpcc7942_0788 0.23 -3.9 784,148 + gst1 Synpcc7942_0788 0.24 -4.4 784,148 + gst1 Synpcc7942_0788 0.24 +0.4 784,156 - gst1 Synpcc7942_0788 0.25 -3.2 784,170 + gst1 Synpcc7942_0788 0.27 -4.2 784,209 + gst1 Synpcc7942_0788 0.32 -1.6 784,231 - gst1 Synpcc7942_0788 0.35 -2.6 784,250 + gst1 Synpcc7942_0788 0.37 -1.6 784,255 + gst1 Synpcc7942_0788 0.38 -3.2 784,270 + gst1 Synpcc7942_0788 0.40 -5.5 784,326 + gst1 Synpcc7942_0788 0.47 -3.9 784,331 + gst1 Synpcc7942_0788 0.47 -3.2 784,334 - gst1 Synpcc7942_0788 0.48 -2.2 784,419 + gst1 Synpcc7942_0788 0.58 -4.9 784,432 - gst1 Synpcc7942_0788 0.60 -3.9 784,501 - gst1 Synpcc7942_0788 0.69 -3.9 784,541 + gst1 Synpcc7942_0788 0.74 -1.3 784,574 - gst1 Synpcc7942_0788 0.78 -1.0 784,627 - gst1 Synpcc7942_0788 0.85 -0.6 784,661 - gst1 Synpcc7942_0788 0.89 -3.2 784,758 + -2.6 784,776 - -1.6 784,800 - -0.3 784,801 + +0.4 784,807 + -0.9 784,843 - +0.4 784,847 - -1.6 784,866 - +0.3 784,866 - +0.9 784,875 + -1.9 784,903 + Synpcc7942_0789 0.18 -2.6 784,909 - Synpcc7942_0789 0.20 +0.1 784,917 - Synpcc7942_0789 0.23 +0.6 784,957 + Synpcc7942_0789 0.35 -2.6 784,965 - Synpcc7942_0789 0.37 +0.8 784,965 - Synpcc7942_0789 0.37 -1.2 784,978 - Synpcc7942_0789 0.41 +1.2 784,991 + Synpcc7942_0789 0.45 +1.5 785,025 - Synpcc7942_0789 0.56 +1.2 785,032 - Synpcc7942_0789 0.58 -0.2 785,034 + Synpcc7942_0789 0.59 +0.2 785,034 + Synpcc7942_0789 0.59 -0.2 785,062 - Synpcc7942_0789 0.67 -0.9 785,081 + Synpcc7942_0789 0.73 -1.1 785,081 + Synpcc7942_0789 0.73 +1.4 785,144 - +3.1 785,148 - -1.0 785,152 + +0.5 785,152 + +0.7 785,158 - -2.6 785,165 + +0.4 785,166 - -1.2 785,264 - +0.7 785,264 - -0.8 785,264 - -1.3 785,291 + +1.0 785,378 - rbp3 Synpcc7942_0790 0.22 +1.9 785,378 - rbp3 Synpcc7942_0790 0.22 -1.6 785,501 + rbp3 Synpcc7942_0790 0.51 +1.2 785,509 - rbp3 Synpcc7942_0790 0.53 -0.8 785,563 - rbp3 Synpcc7942_0790 0.66 -0.0 785,563 - rbp3 Synpcc7942_0790 0.66 -2.2 785,580 - rbp3 Synpcc7942_0790 0.69 -3.9 785,662 - rbp3 Synpcc7942_0790 0.89 -2.6 785,665 + rbp3 Synpcc7942_0790 0.89 -0.2 785,665 + rbp3 Synpcc7942_0790 0.89 -0.6 785,665 + rbp3 Synpcc7942_0790 0.89 -2.6 785,665 + rbp3 Synpcc7942_0790 0.89 -0.0 785,673 - -2.6 785,673 - -1.6 785,673 - -0.3 785,673 - -0.6 785,720 - -1.6 785,738 + -1.6 785,746 - +1.0
Or see this region's nucleotide sequence