Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_757 and Pf1N1B4_758 are separated by 316 nucleotides Pf1N1B4_758 and Pf1N1B4_759 are separated by 197 nucleotides Pf1N1B4_759 and Pf1N1B4_760 are separated by 97 nucleotides
Pf1N1B4_757 - phage-related integrase, at 860,562 to 861,812
_757
Pf1N1B4_758 - Bacterioferritin, at 862,129 to 862,602
_758
Pf1N1B4_759 - Glutaredoxin-related protein, at 862,800 to 863,141
_759
Pf1N1B4_760 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 863,239 to 865,344
_760
Position (kb) 862
863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 861.188 kb on + strand, within Pf1N1B4_757 at 861.189 kb on - strand, within Pf1N1B4_757 at 861.284 kb on + strand, within Pf1N1B4_757 at 861.284 kb on + strand, within Pf1N1B4_757 at 861.285 kb on - strand, within Pf1N1B4_757 at 861.285 kb on - strand, within Pf1N1B4_757 at 861.285 kb on - strand, within Pf1N1B4_757 at 861.285 kb on - strand, within Pf1N1B4_757 at 861.285 kb on - strand, within Pf1N1B4_757 at 861.285 kb on - strand, within Pf1N1B4_757 at 861.285 kb on - strand, within Pf1N1B4_757 at 861.293 kb on + strand, within Pf1N1B4_757 at 861.293 kb on + strand, within Pf1N1B4_757 at 861.294 kb on - strand, within Pf1N1B4_757 at 861.398 kb on + strand, within Pf1N1B4_757 at 861.398 kb on + strand, within Pf1N1B4_757 at 861.399 kb on - strand, within Pf1N1B4_757 at 861.419 kb on - strand, within Pf1N1B4_757 at 861.419 kb on - strand, within Pf1N1B4_757 at 861.481 kb on + strand, within Pf1N1B4_757 at 861.482 kb on - strand, within Pf1N1B4_757 at 861.590 kb on + strand, within Pf1N1B4_757 at 861.608 kb on + strand, within Pf1N1B4_757 at 861.608 kb on + strand, within Pf1N1B4_757 at 861.608 kb on + strand, within Pf1N1B4_757 at 861.711 kb on + strand at 861.712 kb on - strand at 861.734 kb on - strand at 861.736 kb on + strand at 861.737 kb on - strand at 861.890 kb on - strand at 861.897 kb on + strand at 861.897 kb on + strand at 861.897 kb on + strand at 861.898 kb on - strand at 861.898 kb on - strand at 861.905 kb on - strand at 861.905 kb on - strand at 861.906 kb on + strand at 861.906 kb on + strand at 861.907 kb on - strand at 861.907 kb on - strand at 861.907 kb on - strand at 861.907 kb on - strand at 861.907 kb on - strand at 861.907 kb on - strand at 861.907 kb on - strand at 861.907 kb on - strand at 861.907 kb on - strand at 861.907 kb on - strand at 861.907 kb on - strand at 861.912 kb on + strand at 861.916 kb on - strand at 861.916 kb on - strand at 861.916 kb on - strand at 861.916 kb on - strand at 861.916 kb on - strand at 862.044 kb on - strand at 862.058 kb on + strand at 862.058 kb on + strand at 862.058 kb on + strand at 862.059 kb on - strand at 862.078 kb on - strand at 862.100 kb on + strand at 862.100 kb on + strand at 862.100 kb on + strand at 862.101 kb on - strand at 862.101 kb on - strand at 862.109 kb on - strand at 862.109 kb on - strand at 862.143 kb on + strand at 862.201 kb on + strand, within Pf1N1B4_758 at 862.201 kb on + strand, within Pf1N1B4_758 at 862.222 kb on + strand, within Pf1N1B4_758 at 862.222 kb on + strand, within Pf1N1B4_758 at 862.222 kb on + strand, within Pf1N1B4_758 at 862.222 kb on + strand, within Pf1N1B4_758 at 862.222 kb on + strand, within Pf1N1B4_758 at 862.222 kb on + strand, within Pf1N1B4_758 at 862.222 kb on + strand, within Pf1N1B4_758 at 862.223 kb on - strand, within Pf1N1B4_758 at 862.223 kb on - strand, within Pf1N1B4_758 at 862.223 kb on - strand at 862.261 kb on + strand, within Pf1N1B4_758 at 862.573 kb on + strand at 862.573 kb on + strand at 862.574 kb on - strand at 862.574 kb on - strand at 862.574 kb on - strand at 862.600 kb on + strand at 862.600 kb on + strand at 862.601 kb on - strand at 862.607 kb on + strand at 862.629 kb on + strand at 862.630 kb on - strand at 862.649 kb on + strand at 862.650 kb on - strand at 862.651 kb on + strand at 862.667 kb on + strand at 862.730 kb on + strand at 862.744 kb on + strand at 862.744 kb on + strand at 862.744 kb on + strand at 862.744 kb on + strand at 862.744 kb on + strand at 862.744 kb on + strand at 862.745 kb on - strand at 862.745 kb on - strand at 862.745 kb on - strand at 862.952 kb on - strand, within Pf1N1B4_759 at 863.000 kb on - strand, within Pf1N1B4_759 at 863.086 kb on + strand, within Pf1N1B4_759 at 863.087 kb on - strand, within Pf1N1B4_759 at 863.194 kb on + strand at 863.194 kb on + strand at 863.567 kb on + strand, within Pf1N1B4_760 at 863.567 kb on + strand, within Pf1N1B4_760 at 863.568 kb on - strand at 863.568 kb on - strand, within Pf1N1B4_760 at 863.568 kb on - strand, within Pf1N1B4_760 at 863.568 kb on - strand, within Pf1N1B4_760 at 863.568 kb on - strand, within Pf1N1B4_760
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 861,188 + Pf1N1B4_757 0.50 +0.5 861,189 - Pf1N1B4_757 0.50 +1.2 861,284 + Pf1N1B4_757 0.58 +2.2 861,284 + Pf1N1B4_757 0.58 +0.8 861,285 - Pf1N1B4_757 0.58 +0.5 861,285 - Pf1N1B4_757 0.58 -0.8 861,285 - Pf1N1B4_757 0.58 -1.2 861,285 - Pf1N1B4_757 0.58 -0.8 861,285 - Pf1N1B4_757 0.58 -0.3 861,285 - Pf1N1B4_757 0.58 -1.8 861,285 - Pf1N1B4_757 0.58 +0.9 861,293 + Pf1N1B4_757 0.58 -0.8 861,293 + Pf1N1B4_757 0.58 -0.4 861,294 - Pf1N1B4_757 0.59 +1.5 861,398 + Pf1N1B4_757 0.67 -1.6 861,398 + Pf1N1B4_757 0.67 +1.0 861,399 - Pf1N1B4_757 0.67 -0.3 861,419 - Pf1N1B4_757 0.69 -0.6 861,419 - Pf1N1B4_757 0.69 -0.4 861,481 + Pf1N1B4_757 0.73 -1.2 861,482 - Pf1N1B4_757 0.74 +0.9 861,590 + Pf1N1B4_757 0.82 -1.4 861,608 + Pf1N1B4_757 0.84 -1.8 861,608 + Pf1N1B4_757 0.84 +0.9 861,608 + Pf1N1B4_757 0.84 -0.8 861,711 + -2.2 861,712 - +1.2 861,734 - -1.2 861,736 + -1.2 861,737 - +1.4 861,890 - -1.2 861,897 + +0.9 861,897 + -1.5 861,897 + +1.5 861,898 - -1.8 861,898 - -1.2 861,905 - -1.6 861,905 - -1.5 861,906 + -0.4 861,906 + +0.2 861,907 - +0.2 861,907 - -0.3 861,907 - +0.6 861,907 - +1.2 861,907 - +1.0 861,907 - -1.5 861,907 - +0.2 861,907 - +0.8 861,907 - -1.2 861,907 - +0.4 861,907 - -0.3 861,912 + +0.0 861,916 - +0.5 861,916 - +1.2 861,916 - -3.1 861,916 - -0.4 861,916 - -0.8 862,044 - -0.4 862,058 + +1.7 862,058 + -0.3 862,058 + -1.8 862,059 - +0.3 862,078 - -0.7 862,100 + +0.8 862,100 + -1.2 862,100 + +0.2 862,101 - +0.5 862,101 - +0.6 862,109 - -1.2 862,109 - -0.8 862,143 + +0.2 862,201 + Pf1N1B4_758 0.15 -0.5 862,201 + Pf1N1B4_758 0.15 -1.8 862,222 + Pf1N1B4_758 0.20 -2.0 862,222 + Pf1N1B4_758 0.20 -0.4 862,222 + Pf1N1B4_758 0.20 -0.4 862,222 + Pf1N1B4_758 0.20 -0.5 862,222 + Pf1N1B4_758 0.20 -0.4 862,222 + Pf1N1B4_758 0.20 -1.6 862,222 + Pf1N1B4_758 0.20 -0.5 862,223 - Pf1N1B4_758 0.20 +0.6 862,223 - Pf1N1B4_758 0.20 -1.6 862,223 - +1.7 862,261 + Pf1N1B4_758 0.28 -1.4 862,573 + -2.0 862,573 + +0.9 862,574 - -2.9 862,574 - +1.2 862,574 - +0.2 862,600 + -2.5 862,600 + -0.6 862,601 - +0.2 862,607 + -2.9 862,629 + -0.4 862,630 - -0.1 862,649 + +0.7 862,650 - -0.6 862,651 + -1.4 862,667 + -2.4 862,730 + -0.1 862,744 + +0.2 862,744 + +0.2 862,744 + +1.0 862,744 + -1.6 862,744 + -1.0 862,744 + +2.2 862,745 - -1.3 862,745 - -0.1 862,745 - -2.8 862,952 - Pf1N1B4_759 0.44 -1.2 863,000 - Pf1N1B4_759 0.58 -1.4 863,086 + Pf1N1B4_759 0.84 +0.4 863,087 - Pf1N1B4_759 0.84 -3.1 863,194 + -1.0 863,194 + -0.8 863,567 + Pf1N1B4_760 0.16 -1.4 863,567 + Pf1N1B4_760 0.16 +0.6 863,568 - +1.8 863,568 - Pf1N1B4_760 0.16 +1.6 863,568 - Pf1N1B4_760 0.16 -0.6 863,568 - Pf1N1B4_760 0.16 +2.2 863,568 - Pf1N1B4_760 0.16 -0.0
Or see this region's nucleotide sequence