Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_660 and Pf1N1B4_661 are separated by 219 nucleotides Pf1N1B4_661 and Pf1N1B4_662 are separated by 276 nucleotides Pf1N1B4_662 and Pf1N1B4_663 overlap by 4 nucleotides
Pf1N1B4_660 - Chemotactic transducer, at 756,803 to 758,692
_660
Pf1N1B4_661 - glycosyl transferase, group 1 family protein, at 758,912 to 760,033
_661
Pf1N1B4_662 - FIG00955875: hypothetical protein, at 760,310 to 760,801
_662
Pf1N1B4_663 - FIG00955324: hypothetical protein, at 760,798 to 761,793
_663
Position (kb) 758
759
760
761 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 757.957 kb on + strand, within Pf1N1B4_660 at 757.957 kb on + strand, within Pf1N1B4_660 at 758.582 kb on - strand at 758.582 kb on - strand at 758.582 kb on - strand at 758.677 kb on + strand at 758.677 kb on + strand at 758.677 kb on + strand at 758.677 kb on + strand at 758.755 kb on + strand at 758.755 kb on + strand at 758.755 kb on + strand at 758.755 kb on + strand at 758.755 kb on + strand at 758.755 kb on + strand at 758.756 kb on - strand at 758.756 kb on - strand at 758.756 kb on - strand at 758.865 kb on + strand at 758.865 kb on + strand at 758.865 kb on + strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.866 kb on - strand at 758.874 kb on + strand at 758.875 kb on - strand at 758.875 kb on - strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.876 kb on + strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.877 kb on - strand at 758.937 kb on + strand at 758.937 kb on + strand at 758.937 kb on + strand at 758.937 kb on + strand at 758.937 kb on + strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.938 kb on - strand at 758.948 kb on + strand at 758.949 kb on - strand at 758.949 kb on - strand at 758.978 kb on + strand at 758.978 kb on + strand at 758.979 kb on - strand at 758.979 kb on - strand at 758.979 kb on - strand at 759.194 kb on + strand, within Pf1N1B4_661 at 759.257 kb on + strand, within Pf1N1B4_661 at 759.307 kb on + strand, within Pf1N1B4_661 at 759.326 kb on + strand, within Pf1N1B4_661 at 759.326 kb on + strand, within Pf1N1B4_661 at 759.326 kb on + strand, within Pf1N1B4_661 at 759.327 kb on - strand at 759.327 kb on - strand, within Pf1N1B4_661 at 759.327 kb on - strand, within Pf1N1B4_661 at 759.327 kb on - strand, within Pf1N1B4_661 at 759.327 kb on - strand, within Pf1N1B4_661 at 759.327 kb on - strand, within Pf1N1B4_661 at 759.327 kb on - strand, within Pf1N1B4_661 at 759.341 kb on + strand, within Pf1N1B4_661 at 759.341 kb on + strand, within Pf1N1B4_661 at 759.342 kb on - strand, within Pf1N1B4_661 at 759.342 kb on - strand, within Pf1N1B4_661 at 759.342 kb on - strand, within Pf1N1B4_661 at 759.342 kb on - strand, within Pf1N1B4_661 at 759.343 kb on + strand, within Pf1N1B4_661 at 759.343 kb on + strand, within Pf1N1B4_661 at 759.343 kb on + strand, within Pf1N1B4_661 at 759.343 kb on + strand, within Pf1N1B4_661 at 759.344 kb on - strand, within Pf1N1B4_661 at 759.344 kb on - strand, within Pf1N1B4_661 at 759.389 kb on - strand, within Pf1N1B4_661 at 759.424 kb on - strand, within Pf1N1B4_661 at 759.508 kb on + strand, within Pf1N1B4_661 at 759.509 kb on - strand, within Pf1N1B4_661 at 759.607 kb on - strand at 759.947 kb on + strand at 759.947 kb on + strand at 759.947 kb on + strand at 759.948 kb on - strand at 759.948 kb on - strand at 759.987 kb on - strand at 760.178 kb on + strand at 760.178 kb on + strand at 760.179 kb on - strand at 760.260 kb on + strand at 760.323 kb on - strand at 760.323 kb on - strand at 760.323 kb on - strand at 760.343 kb on + strand at 760.407 kb on - strand, within Pf1N1B4_662 at 760.407 kb on - strand, within Pf1N1B4_662 at 760.408 kb on + strand, within Pf1N1B4_662 at 760.408 kb on + strand, within Pf1N1B4_662 at 760.408 kb on + strand, within Pf1N1B4_662 at 760.408 kb on + strand, within Pf1N1B4_662 at 760.409 kb on - strand at 760.409 kb on - strand, within Pf1N1B4_662 at 760.409 kb on - strand, within Pf1N1B4_662 at 760.409 kb on - strand at 760.409 kb on - strand, within Pf1N1B4_662
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 757,957 + Pf1N1B4_660 0.61 +0.8 757,957 + Pf1N1B4_660 0.61 +1.2 758,582 - -1.2 758,582 - +1.5 758,582 - +1.4 758,677 + -0.9 758,677 + -0.6 758,677 + +0.5 758,677 + -1.9 758,755 + -1.9 758,755 + +0.1 758,755 + -0.7 758,755 + -1.7 758,755 + -0.3 758,755 + -0.2 758,756 - +0.1 758,756 - +0.4 758,756 - -1.6 758,865 + +0.7 758,865 + -0.1 758,865 + +1.5 758,866 - +0.8 758,866 - -1.9 758,866 - +0.1 758,866 - +0.8 758,866 - -1.9 758,866 - +1.1 758,866 - +1.4 758,866 - +1.8 758,866 - -0.5 758,874 + +1.2 758,875 - +0.9 758,875 - -1.3 758,876 + +1.7 758,876 + -0.1 758,876 + -0.0 758,876 + +0.9 758,876 + +0.5 758,876 + -0.2 758,876 + +0.1 758,876 + +0.1 758,876 + +0.8 758,876 + +1.5 758,877 - +0.5 758,877 - +1.1 758,877 - -1.5 758,877 - -1.5 758,877 - -2.0 758,877 - -0.2 758,877 - +0.1 758,877 - +1.1 758,877 - -1.7 758,877 - -0.5 758,877 - -0.2 758,877 - +1.1 758,877 - +1.7 758,877 - -0.7 758,877 - -0.2 758,877 - -2.3 758,937 + -1.2 758,937 + -1.5 758,937 + +0.1 758,937 + -0.2 758,937 + -1.7 758,938 - -1.5 758,938 - -1.2 758,938 - -0.9 758,938 - -0.3 758,938 - +0.4 758,938 - -1.9 758,938 - +0.8 758,938 - -0.0 758,938 - +1.1 758,948 + -0.1 758,949 - +0.3 758,949 - -0.5 758,978 + +0.1 758,978 + +0.9 758,979 - +1.1 758,979 - +0.4 758,979 - -0.9 759,194 + Pf1N1B4_661 0.25 -1.9 759,257 + Pf1N1B4_661 0.31 +2.1 759,307 + Pf1N1B4_661 0.35 +0.1 759,326 + Pf1N1B4_661 0.37 -1.5 759,326 + Pf1N1B4_661 0.37 -1.7 759,326 + Pf1N1B4_661 0.37 -1.7 759,327 - +1.1 759,327 - Pf1N1B4_661 0.37 +0.8 759,327 - Pf1N1B4_661 0.37 +0.1 759,327 - Pf1N1B4_661 0.37 +1.1 759,327 - Pf1N1B4_661 0.37 -0.2 759,327 - Pf1N1B4_661 0.37 +1.9 759,327 - Pf1N1B4_661 0.37 +0.1 759,341 + Pf1N1B4_661 0.38 +0.7 759,341 + Pf1N1B4_661 0.38 -1.2 759,342 - Pf1N1B4_661 0.38 -1.2 759,342 - Pf1N1B4_661 0.38 -1.4 759,342 - Pf1N1B4_661 0.38 +0.1 759,342 - Pf1N1B4_661 0.38 -0.5 759,343 + Pf1N1B4_661 0.38 -0.9 759,343 + Pf1N1B4_661 0.38 -0.9 759,343 + Pf1N1B4_661 0.38 +1.5 759,343 + Pf1N1B4_661 0.38 -1.2 759,344 - Pf1N1B4_661 0.39 -3.5 759,344 - Pf1N1B4_661 0.39 +1.1 759,389 - Pf1N1B4_661 0.43 +2.1 759,424 - Pf1N1B4_661 0.46 -0.9 759,508 + Pf1N1B4_661 0.53 -1.8 759,509 - Pf1N1B4_661 0.53 -2.5 759,607 - +0.1 759,947 + -0.3 759,947 + -1.9 759,947 + -0.1 759,948 - +2.7 759,948 - -0.1 759,987 - +0.0 760,178 + -0.5 760,178 + -0.7 760,179 - +1.1 760,260 + -0.5 760,323 - -1.9 760,323 - -2.1 760,323 - -0.3 760,343 + +0.9 760,407 - Pf1N1B4_662 0.20 +1.1 760,407 - Pf1N1B4_662 0.20 +1.3 760,408 + Pf1N1B4_662 0.20 -0.9 760,408 + Pf1N1B4_662 0.20 -0.9 760,408 + Pf1N1B4_662 0.20 +1.1 760,408 + Pf1N1B4_662 0.20 +0.8 760,409 - +0.1 760,409 - Pf1N1B4_662 0.20 +0.2 760,409 - Pf1N1B4_662 0.20 +1.7 760,409 - +1.5 760,409 - Pf1N1B4_662 0.20 -0.5
Or see this region's nucleotide sequence