Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5945

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5944 and Pf1N1B4_5945 are separated by 255 nucleotidesPf1N1B4_5945 and Pf1N1B4_5946 are separated by 123 nucleotides Pf1N1B4_5944 - Membrane protein involved in the export of O-antigen and teichoic acid, RfbX family, at 391,277 to 392,533 _5944 Pf1N1B4_5945 - UDP-glucose dehydrogenase (EC 1.1.1.22), at 392,789 to 394,297 _5945 Pf1N1B4_5946 - Tyrosine-protein kinase Wzc (EC 2.7.10.2), at 394,421 to 396,649 _5946 Position (kb) 392 393 394 395Strain fitness (log2 ratio) -1 0 1 2at 392.769 kb on - strandat 392.769 kb on - strandat 392.769 kb on - strandat 394.119 kb on - strand, within Pf1N1B4_5945at 394.210 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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392,769 - +0.5
392,769 - +0.3
392,769 - -1.2
394,119 - Pf1N1B4_5945 0.88 +1.8
394,210 - -0.5

Or see this region's nucleotide sequence