Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5851 and Pf1N1B4_5852 are separated by 2 nucleotides Pf1N1B4_5852 and Pf1N1B4_5853 overlap by 4 nucleotides Pf1N1B4_5853 and Pf1N1B4_5854 overlap by 17 nucleotides Pf1N1B4_5854 and Pf1N1B4_5855 are separated by 57 nucleotides
Pf1N1B4_5851 - Transcriptional regulator, RpiR family, at 283,757 to 284,611
_5851
Pf1N1B4_5852 - Amidases related to nicotinamidase, at 284,614 to 285,258
_5852
Pf1N1B4_5853 - Glutamine synthetase (EC 6.3.1.2), putative, at 285,255 to 286,586
_5853
Pf1N1B4_5854 - FIG00960144: hypothetical protein, at 286,570 to 287,322
_5854
Pf1N1B4_5855 - Putrescine importer, at 287,380 to 288,729
_5855
Position (kb) 285
286
287 Strain fitness (log2 ratio) -2
-1
0
1
2 at 284.402 kb on + strand, within Pf1N1B4_5851 at 284.403 kb on - strand at 284.609 kb on + strand at 284.610 kb on - strand at 285.154 kb on + strand, within Pf1N1B4_5852 at 285.155 kb on - strand at 285.172 kb on + strand, within Pf1N1B4_5852 at 285.444 kb on + strand, within Pf1N1B4_5853 at 286.005 kb on + strand, within Pf1N1B4_5853 at 286.005 kb on + strand, within Pf1N1B4_5853 at 286.071 kb on + strand, within Pf1N1B4_5853 at 286.116 kb on + strand, within Pf1N1B4_5853 at 286.116 kb on + strand, within Pf1N1B4_5853 at 286.240 kb on - strand, within Pf1N1B4_5853 at 286.570 kb on - strand at 286.607 kb on - strand at 286.624 kb on - strand at 286.819 kb on + strand at 286.819 kb on + strand, within Pf1N1B4_5854 at 286.819 kb on + strand, within Pf1N1B4_5854 at 286.820 kb on - strand, within Pf1N1B4_5854 at 287.051 kb on + strand, within Pf1N1B4_5854 at 287.051 kb on + strand, within Pf1N1B4_5854 at 287.053 kb on + strand, within Pf1N1B4_5854 at 287.053 kb on + strand, within Pf1N1B4_5854 at 287.053 kb on + strand, within Pf1N1B4_5854 at 287.053 kb on + strand, within Pf1N1B4_5854 at 287.053 kb on + strand, within Pf1N1B4_5854 at 287.092 kb on + strand, within Pf1N1B4_5854 at 287.093 kb on - strand, within Pf1N1B4_5854 at 287.173 kb on + strand, within Pf1N1B4_5854 at 287.302 kb on + strand at 287.320 kb on + strand at 287.328 kb on + strand at 287.329 kb on - strand at 287.329 kb on - strand at 287.387 kb on + strand at 287.536 kb on + strand, within Pf1N1B4_5855 at 287.536 kb on + strand, within Pf1N1B4_5855 at 287.537 kb on - strand, within Pf1N1B4_5855
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 284,402 + Pf1N1B4_5851 0.75 +1.2 284,403 - +0.8 284,609 + +0.1 284,610 - +1.2 285,154 + Pf1N1B4_5852 0.84 -2.2 285,155 - -1.2 285,172 + Pf1N1B4_5852 0.87 -2.2 285,444 + Pf1N1B4_5853 0.14 -0.8 286,005 + Pf1N1B4_5853 0.56 -1.5 286,005 + Pf1N1B4_5853 0.56 -1.8 286,071 + Pf1N1B4_5853 0.61 -0.2 286,116 + Pf1N1B4_5853 0.65 -1.0 286,116 + Pf1N1B4_5853 0.65 -1.2 286,240 - Pf1N1B4_5853 0.74 +0.8 286,570 - +0.8 286,607 - +1.0 286,624 - +0.2 286,819 + -0.2 286,819 + Pf1N1B4_5854 0.33 +2.6 286,819 + Pf1N1B4_5854 0.33 -1.8 286,820 - Pf1N1B4_5854 0.33 -1.8 287,051 + Pf1N1B4_5854 0.64 +1.2 287,051 + Pf1N1B4_5854 0.64 -0.0 287,053 + Pf1N1B4_5854 0.64 +0.2 287,053 + Pf1N1B4_5854 0.64 -2.2 287,053 + Pf1N1B4_5854 0.64 -0.8 287,053 + Pf1N1B4_5854 0.64 +1.5 287,053 + Pf1N1B4_5854 0.64 +0.9 287,092 + Pf1N1B4_5854 0.69 -1.5 287,093 - Pf1N1B4_5854 0.69 -1.2 287,173 + Pf1N1B4_5854 0.80 +0.6 287,302 + +1.8 287,320 + +0.1 287,328 + +0.6 287,329 - -0.8 287,329 - +0.1 287,387 + -1.8 287,536 + Pf1N1B4_5855 0.12 -0.5 287,536 + Pf1N1B4_5855 0.12 +1.0 287,537 - Pf1N1B4_5855 0.12 -1.8
Or see this region's nucleotide sequence