Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5709

Experiment: D-Glucosamine Hydrochloride (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_5708 and Pf1N1B4_5709 are separated by 355 nucleotidesPf1N1B4_5709 and Pf1N1B4_5710 are separated by 22 nucleotidesPf1N1B4_5710 and Pf1N1B4_5711 are separated by 92 nucleotides Pf1N1B4_5708 - Transcriptional regulator, TetR family, at 146,847 to 147,461 _5708 Pf1N1B4_5709 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 147,817 to 149,052 _5709 Pf1N1B4_5710 - Transcriptional regulator, TetR family, at 149,075 to 149,629 _5710 Pf1N1B4_5711 - Salicylate hydroxylase (EC 1.14.13.1), at 149,722 to 151,380 _5711 Position (kb) 147 148 149 150Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 147.330 kb on - strand, within Pf1N1B4_5708at 147.332 kb on - strand, within Pf1N1B4_5708at 147.332 kb on - strand, within Pf1N1B4_5708at 147.480 kb on - strandat 147.567 kb on + strandat 147.567 kb on + strandat 147.567 kb on + strandat 147.590 kb on + strandat 147.591 kb on - strandat 147.591 kb on - strandat 147.591 kb on - strandat 147.623 kb on + strandat 147.747 kb on - strandat 148.148 kb on + strand, within Pf1N1B4_5709at 148.148 kb on + strand, within Pf1N1B4_5709at 148.149 kb on - strand, within Pf1N1B4_5709at 148.278 kb on + strand, within Pf1N1B4_5709at 148.604 kb on - strand, within Pf1N1B4_5709at 148.664 kb on - strand, within Pf1N1B4_5709at 149.026 kb on + strandat 149.121 kb on - strandat 149.175 kb on - strand, within Pf1N1B4_5710at 149.219 kb on + strand, within Pf1N1B4_5710at 149.219 kb on + strand, within Pf1N1B4_5710at 149.526 kb on + strand, within Pf1N1B4_5710at 149.527 kb on - strand, within Pf1N1B4_5710at 149.732 kb on - strandat 149.856 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
remove
147,330 - Pf1N1B4_5708 0.79 -1.4
147,332 - Pf1N1B4_5708 0.79 +0.1
147,332 - Pf1N1B4_5708 0.79 -0.5
147,480 - +0.3
147,567 + -1.2
147,567 + +2.4
147,567 + +1.4
147,590 + -1.8
147,591 - -0.6
147,591 - -0.2
147,591 - -2.4
147,623 + -0.8
147,747 - -2.2
148,148 + Pf1N1B4_5709 0.27 -1.2
148,148 + Pf1N1B4_5709 0.27 -1.0
148,149 - Pf1N1B4_5709 0.27 -1.3
148,278 + Pf1N1B4_5709 0.37 -2.9
148,604 - Pf1N1B4_5709 0.64 +0.2
148,664 - Pf1N1B4_5709 0.69 -0.5
149,026 + -0.8
149,121 - +1.1
149,175 - Pf1N1B4_5710 0.18 +0.4
149,219 + Pf1N1B4_5710 0.26 +0.8
149,219 + Pf1N1B4_5710 0.26 -0.7
149,526 + Pf1N1B4_5710 0.81 -0.1
149,527 - Pf1N1B4_5710 0.81 +1.6
149,732 - +2.0
149,856 + -0.2

Or see this region's nucleotide sequence