Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5591

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5590 and Pf1N1B4_5591 are separated by 143 nucleotidesPf1N1B4_5591 and Pf1N1B4_5592 are separated by 15 nucleotidesPf1N1B4_5592 and Pf1N1B4_5593 overlap by 32 nucleotides Pf1N1B4_5590 - Trans-feruloyl-CoA synthase (EC 6.2.1.34), at 11,783 to 13,666 _5590 Pf1N1B4_5591 - Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28), at 13,810 to 15,258 _5591 Pf1N1B4_5592 - hypothetical protein, at 15,274 to 15,417 _5592 Pf1N1B4_5593 - 4-hydroxycinnamoyl CoA hydratase/lyase (Enoyl-CoA hydratase/lyase) (EC 4.2.1.17), at 15,386 to 16,216 _5593 Position (kb) 13 14 15 16Strain fitness (log2 ratio) -2 -1 0 1at 13.288 kb on - strand, within Pf1N1B4_5590at 13.419 kb on + strand, within Pf1N1B4_5590at 13.559 kb on + strandat 13.560 kb on - strandat 13.560 kb on - strandat 13.604 kb on + strandat 13.737 kb on + strandat 13.744 kb on - strandat 13.744 kb on - strandat 13.744 kb on - strandat 13.744 kb on - strandat 13.744 kb on - strandat 13.965 kb on + strand, within Pf1N1B4_5591at 14.184 kb on + strand, within Pf1N1B4_5591at 14.878 kb on + strand, within Pf1N1B4_5591at 14.878 kb on + strandat 14.878 kb on + strand, within Pf1N1B4_5591at 14.879 kb on - strand, within Pf1N1B4_5591at 15.273 kb on - strandat 15.291 kb on - strand, within Pf1N1B4_5592at 15.508 kb on - strand, within Pf1N1B4_5593at 15.708 kb on + strand, within Pf1N1B4_5593at 15.708 kb on + strand, within Pf1N1B4_5593at 15.709 kb on - strand, within Pf1N1B4_5593at 15.709 kb on - strand, within Pf1N1B4_5593at 15.709 kb on - strand, within Pf1N1B4_5593at 15.709 kb on - strand, within Pf1N1B4_5593at 15.709 kb on - strand, within Pf1N1B4_5593at 15.903 kb on + strand, within Pf1N1B4_5593at 15.904 kb on - strand, within Pf1N1B4_5593at 15.993 kb on + strand, within Pf1N1B4_5593at 15.994 kb on - strand, within Pf1N1B4_5593at 15.994 kb on - strand, within Pf1N1B4_5593at 15.994 kb on - strand, within Pf1N1B4_5593at 16.206 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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13,288 - Pf1N1B4_5590 0.80 -0.4
13,419 + Pf1N1B4_5590 0.87 +1.1
13,559 + -0.5
13,560 - -0.8
13,560 - -0.0
13,604 + +0.8
13,737 + +0.2
13,744 - +1.0
13,744 - -2.0
13,744 - +0.4
13,744 - +1.4
13,744 - -0.2
13,965 + Pf1N1B4_5591 0.11 -0.8
14,184 + Pf1N1B4_5591 0.26 -1.5
14,878 + Pf1N1B4_5591 0.74 +0.8
14,878 + +0.8
14,878 + Pf1N1B4_5591 0.74 -0.5
14,879 - Pf1N1B4_5591 0.74 -1.2
15,273 - +0.4
15,291 - Pf1N1B4_5592 0.12 -0.5
15,508 - Pf1N1B4_5593 0.15 -1.5
15,708 + Pf1N1B4_5593 0.39 -0.1
15,708 + Pf1N1B4_5593 0.39 -1.0
15,709 - Pf1N1B4_5593 0.39 +1.2
15,709 - Pf1N1B4_5593 0.39 -0.2
15,709 - Pf1N1B4_5593 0.39 -0.0
15,709 - Pf1N1B4_5593 0.39 +0.5
15,709 - Pf1N1B4_5593 0.39 -2.2
15,903 + Pf1N1B4_5593 0.62 +0.5
15,904 - Pf1N1B4_5593 0.62 -0.5
15,993 + Pf1N1B4_5593 0.73 -0.1
15,994 - Pf1N1B4_5593 0.73 -2.2
15,994 - Pf1N1B4_5593 0.73 -1.5
15,994 - Pf1N1B4_5593 0.73 -0.1
16,206 + +1.4

Or see this region's nucleotide sequence