Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4523

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4521 and Pf1N1B4_4522 are separated by 140 nucleotidesPf1N1B4_4522 and Pf1N1B4_4523 are separated by 3 nucleotidesPf1N1B4_4523 and Pf1N1B4_4524 are separated by 212 nucleotides Pf1N1B4_4521 - Probable transmembrane protein, at 4,985,051 to 4,985,485 _4521 Pf1N1B4_4522 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 4,985,626 to 4,986,060 _4522 Pf1N1B4_4523 - RNA polymerase sigma-70 factor, ECF subfamily, at 4,986,064 to 4,986,957 _4523 Pf1N1B4_4524 - Sensory box transcriptional regulator, LuxR family, at 4,987,170 to 4,988,666 _4524 Position (kb) 4986 4987Strain fitness (log2 ratio) -2 -1 0 1 2at 4985.265 kb on - strand, within Pf1N1B4_4521at 4985.269 kb on - strandat 4985.269 kb on - strand, within Pf1N1B4_4521at 4985.269 kb on - strand, within Pf1N1B4_4521at 4985.269 kb on - strand, within Pf1N1B4_4521at 4985.300 kb on + strand, within Pf1N1B4_4521at 4985.301 kb on - strand, within Pf1N1B4_4521at 4985.518 kb on - strandat 4985.966 kb on + strand, within Pf1N1B4_4522at 4985.966 kb on + strand, within Pf1N1B4_4522at 4986.285 kb on + strand, within Pf1N1B4_4523at 4986.285 kb on + strand, within Pf1N1B4_4523at 4986.301 kb on + strand, within Pf1N1B4_4523at 4986.777 kb on + strand, within Pf1N1B4_4523at 4986.778 kb on - strand, within Pf1N1B4_4523at 4986.778 kb on - strand, within Pf1N1B4_4523at 4986.956 kb on - strandat 4987.098 kb on + strandat 4987.408 kb on - strand, within Pf1N1B4_4524at 4987.450 kb on + strand, within Pf1N1B4_4524at 4987.451 kb on - strandat 4987.451 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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4,985,265 - Pf1N1B4_4521 0.49 -0.7
4,985,269 - -0.2
4,985,269 - Pf1N1B4_4521 0.50 +0.2
4,985,269 - Pf1N1B4_4521 0.50 -0.2
4,985,269 - Pf1N1B4_4521 0.50 -0.7
4,985,300 + Pf1N1B4_4521 0.57 +0.8
4,985,301 - Pf1N1B4_4521 0.57 -1.2
4,985,518 - +1.2
4,985,966 + Pf1N1B4_4522 0.78 -0.7
4,985,966 + Pf1N1B4_4522 0.78 +0.1
4,986,285 + Pf1N1B4_4523 0.25 -1.2
4,986,285 + Pf1N1B4_4523 0.25 -1.6
4,986,301 + Pf1N1B4_4523 0.27 -0.8
4,986,777 + Pf1N1B4_4523 0.80 -0.8
4,986,778 - Pf1N1B4_4523 0.80 -2.4
4,986,778 - Pf1N1B4_4523 0.80 +0.4
4,986,956 - +0.8
4,987,098 + -0.1
4,987,408 - Pf1N1B4_4524 0.16 -1.4
4,987,450 + Pf1N1B4_4524 0.19 -0.8
4,987,451 - -1.2
4,987,451 - +1.8

Or see this region's nucleotide sequence